Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PBC entry

There is 1 chain in PDB entry 6PBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21LYS 1215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6PBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
87 92Right-handed alpha
Helix 3
AA3
A
126 146Right-handed alpha
Helix 4
AA4
A
148 164Right-handed alpha
Helix 5
AA5
A
173 184Right-handed alpha
Helix 6
AA6
A
210 225Right-handed alpha
Helix 7
AA7
A
251 261Right-handed alpha
Helix 8
AA8
A
264 268Right-handed 310
Helix 9
AA9
A
269 282Right-handed alpha
Helix 10
AB1
A
294 303Right-handed alpha
Helix 11
AB2
A
304 308Right-handed 310
Helix 12
AB3
A
311 316Right-handed 310
Helix 13
AB4
A
318 322Right-handed 310
Helix 14
AB5
A
325 327Right-handed 310
Helix 15
AB6
A
349 359Right-handed alpha
Helix 16
AB7
A
390 401Right-handed alpha
Helix 17
AB8
A
418 434Right-handed alpha
Helix 18
AB9
A
435 437Right-handed 310
Helix 19
AC1
A
452 456Right-handed 310
Helix 20
AC2
A
558 577Right-handed alpha
Helix 21
AC3
A
631 640Right-handed alpha
Helix 22
AC4
A
661 666Right-handed 310
Helix 23
AC5
A
674 683Right-handed alpha
Helix 24
AC6
A
733 744Right-handed alpha
Helix 25
AC7
A
757 764Right-handed alpha
Helix 26
AC8
A
851 855Right-handed 310
Helix 27
AC9
A
868 870Right-handed 310
Helix 28
AD1
A
879 881Right-handed 310
Helix 29
AD2
A
915 931Right-handed alpha
Helix 30
AD3
A
950 955Right-handed alpha
Helix 31
AD4
A
966 970Right-handed 310
Helix 32
AD5
A
985 989Right-handed alpha
Helix 33
AD6
A
996 1007Right-handed alpha
Helix 34
AD7
A
1025 1030Right-handed alpha
Helix 35
AD8
A
1044 1054Right-handed alpha
Helix 36
AD9
A
1078 1083Right-handed 310
Helix 37
AE1
A
1120 1123Right-handed 310
Helix 38
AE2
A
1181 1183Right-handed 310
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There are 13 sheets in PDB entry 6PBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
118 123anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
78 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
292 293anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
1062 1064anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
1035 1038parallel
Strand 3
A
1009 1012parallel
Strand 4
A
979 984parallel
Strand 5
A
961 962parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
377 378anti-parallel
Strand 3
A
363 369anti-parallel
Strand 4
A
409 415parallel
Strand 5
A
459 462parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
872 877first strand
Strand 2
A
516 522anti-parallel
Strand 3
A
505 512anti-parallel
Strand 4
A
491 498anti-parallel
Strand 5
A
908 913anti-parallel
Strand 6
A
895 900anti-parallel
Strand 7
A
882 886anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 587first strand
Strand 2
A
595 601anti-parallel
Strand 3
A
604 613anti-parallel
Strand 4
A
620 623anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
690 695parallel
Strand 3
A
701 708anti-parallel
Strand 4
A
711 720anti-parallel
Strand 5
A
723 726anti-parallel
Strand 6
A
729 731anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
690 695parallel
Strand 3
A
754 755parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
836 842first strand
Strand 2
A
828 833anti-parallel
Strand 3
A
817 822anti-parallel
Strand 4
A
794 798anti-parallel
Strand 5
A
846 848anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1149first strand
Strand 2
A
1088 1098anti-parallel
Strand 3
A
1199 1212anti-parallel
Strand 4
A
1186 1193anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1124 1127first strand
Strand 2
A
1110 1118anti-parallel
Strand 3
A
1155 1164anti-parallel
Strand 4
A
1170 1179anti-parallel
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