Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PBE entry

There are 4 chains in PDB entry 6PBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 29	ASP 638
B	TRP 29	ASP 638
C	TRP 29	ASP 638
D	TRP 29	ASP 638

There are124 helices in PDB entry 6PBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	47	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	58	67	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	119	128	Right-handed alpha
Helix 7	AA7	A	129	139	Right-handed alpha
Helix 8	AA8	A	165	174	Right-handed alpha
Helix 9	AA9	A	178	184	Right-handed alpha
Helix 10	AB1	A	193	197	Right-handed 310
Helix 11	AB2	A	198	205	Right-handed alpha
Helix 12	AB3	A	212	223	Right-handed alpha
Helix 13	AB4	A	242	251	Right-handed alpha
Helix 14	AB5	A	252	260	Right-handed alpha
Helix 15	AB6	A	261	263	Right-handed 310
Helix 16	AB7	A	291	298	Right-handed alpha
Helix 17	AB8	A	306	309	Right-handed 310
Helix 18	AB9	A	310	325	Right-handed alpha
Helix 19	AC1	A	325	349	Right-handed alpha
Helix 20	AC2	A	372	376	Right-handed 310
Helix 21	AC3	A	379	408	Right-handed alpha
Helix 22	AC4	A	411	418	Right-handed alpha
Helix 23	AC5	A	422	445	Right-handed alpha
Helix 24	AC6	A	450	464	Right-handed alpha
Helix 25	AC7	A	465	469	Right-handed 310
Helix 26	AC8	A	475	495	Right-handed alpha
Helix 27	AC9	A	497	512	Right-handed alpha
Helix 28	AD1	A	525	538	Right-handed alpha
Helix 29	AD2	A	552	567	Right-handed alpha
Helix 30	AD3	A	569	585	Right-handed alpha
Helix 31	AD4	A	587	608	Right-handed alpha
Helix 32	AD5	B	30	47	Right-handed alpha
Helix 33	AD6	B	47	56	Right-handed alpha
Helix 34	AD7	B	58	67	Right-handed alpha
Helix 35	AD8	B	81	89	Right-handed alpha
Helix 36	AD9	B	91	102	Right-handed alpha
Helix 37	AE1	B	119	128	Right-handed alpha
Helix 38	AE2	B	129	139	Right-handed alpha
Helix 39	AE3	B	165	174	Right-handed alpha
Helix 40	AE4	B	178	184	Right-handed alpha
Helix 41	AE5	B	193	197	Right-handed 310
Helix 42	AE6	B	198	205	Right-handed alpha
Helix 43	AE7	B	212	223	Right-handed alpha
Helix 44	AE8	B	242	251	Right-handed alpha
Helix 45	AE9	B	252	260	Right-handed alpha
Helix 46	AF1	B	261	263	Right-handed 310
Helix 47	AF2	B	291	298	Right-handed alpha
Helix 48	AF3	B	306	309	Right-handed 310
Helix 49	AF4	B	310	325	Right-handed alpha
Helix 50	AF5	B	325	349	Right-handed alpha
Helix 51	AF6	B	372	376	Right-handed 310
Helix 52	AF7	B	379	408	Right-handed alpha
Helix 53	AF8	B	411	418	Right-handed alpha
Helix 54	AF9	B	422	445	Right-handed alpha
Helix 55	AG1	B	450	464	Right-handed alpha
Helix 56	AG2	B	465	469	Right-handed 310
Helix 57	AG3	B	475	495	Right-handed alpha
Helix 58	AG4	B	497	512	Right-handed alpha
Helix 59	AG5	B	525	538	Right-handed alpha
Helix 60	AG6	B	552	567	Right-handed alpha
Helix 61	AG7	B	569	585	Right-handed alpha
Helix 62	AG8	B	587	608	Right-handed alpha
Helix 63	AG9	C	30	47	Right-handed alpha
Helix 64	AH1	C	47	56	Right-handed alpha
Helix 65	AH2	C	58	67	Right-handed alpha
Helix 66	AH3	C	81	89	Right-handed alpha
Helix 67	AH4	C	91	102	Right-handed alpha
Helix 68	AH5	C	119	128	Right-handed alpha
Helix 69	AH6	C	129	139	Right-handed alpha
Helix 70	AH7	C	165	174	Right-handed alpha
Helix 71	AH8	C	178	184	Right-handed alpha
Helix 72	AH9	C	193	197	Right-handed 310
Helix 73	AI1	C	198	205	Right-handed alpha
Helix 74	AI2	C	212	223	Right-handed alpha
Helix 75	AI3	C	242	251	Right-handed alpha
Helix 76	AI4	C	252	260	Right-handed alpha
Helix 77	AI5	C	261	263	Right-handed 310
Helix 78	AI6	C	291	298	Right-handed alpha
Helix 79	AI7	C	306	309	Right-handed 310
Helix 80	AI8	C	310	325	Right-handed alpha
Helix 81	AI9	C	325	349	Right-handed alpha
Helix 82	AJ1	C	372	376	Right-handed 310
Helix 83	AJ2	C	379	408	Right-handed alpha
Helix 84	AJ3	C	411	418	Right-handed alpha
Helix 85	AJ4	C	422	445	Right-handed alpha
Helix 86	AJ5	C	450	464	Right-handed alpha
Helix 87	AJ6	C	465	469	Right-handed 310
Helix 88	AJ7	C	475	495	Right-handed alpha
Helix 89	AJ8	C	497	512	Right-handed alpha
Helix 90	AJ9	C	525	538	Right-handed alpha
Helix 91	AK1	C	552	567	Right-handed alpha
Helix 92	AK2	C	569	585	Right-handed alpha
Helix 93	AK3	C	587	608	Right-handed alpha
Helix 94	AK4	D	30	47	Right-handed alpha
Helix 95	AK5	D	47	56	Right-handed alpha
Helix 96	AK6	D	58	67	Right-handed alpha
Helix 97	AK7	D	81	89	Right-handed alpha
Helix 98	AK8	D	91	102	Right-handed alpha
Helix 99	AK9	D	119	128	Right-handed alpha
Helix 100	AL1	D	129	139	Right-handed alpha
Helix 101	AL2	D	165	174	Right-handed alpha
Helix 102	AL3	D	178	184	Right-handed alpha
Helix 103	AL4	D	193	197	Right-handed 310
Helix 104	AL5	D	198	205	Right-handed alpha
Helix 105	AL6	D	212	223	Right-handed alpha
Helix 106	AL7	D	242	251	Right-handed alpha
Helix 107	AL8	D	252	260	Right-handed alpha
Helix 108	AL9	D	261	263	Right-handed 310
Helix 109	AM1	D	291	298	Right-handed alpha
Helix 110	AM2	D	306	309	Right-handed 310
Helix 111	AM3	D	310	325	Right-handed alpha
Helix 112	AM4	D	325	349	Right-handed alpha
Helix 113	AM5	D	372	376	Right-handed 310
Helix 114	AM6	D	379	408	Right-handed alpha
Helix 115	AM7	D	411	418	Right-handed alpha
Helix 116	AM8	D	422	445	Right-handed alpha
Helix 117	AM9	D	450	464	Right-handed alpha
Helix 118	AN1	D	465	469	Right-handed 310
Helix 119	AN2	D	475	495	Right-handed alpha
Helix 120	AN3	D	497	512	Right-handed alpha
Helix 121	AN4	D	525	538	Right-handed alpha
Helix 122	AN5	D	552	567	Right-handed alpha
Helix 123	AN6	D	569	585	Right-handed alpha
Helix 124	AN7	D	587	608	Right-handed alpha

There are 8 sheets in PDB entry 6PBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	633	636	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	633	636	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	633	636	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	633	636	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBE