Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PBF entry

There are 4 chains in PDB entry 6PBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 29HIS 637
B
 TRP 29HIS 637
C
 TRP 29HIS 637
D
 TRP 29HIS 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 6PBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 47Right-handed alpha
Helix 2
AA2
A
47 56Right-handed alpha
Helix 3
AA3
A
60 65Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
91 102Right-handed alpha
Helix 6
AA6
A
119 128Right-handed alpha
Helix 7
AA7
A
129 140Right-handed alpha
Helix 8
AA8
A
165 174Right-handed alpha
Helix 9
AA9
A
175 185Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
209 222Right-handed alpha
Helix 13
AB4
A
242 251Right-handed alpha
Helix 14
AB5
A
252 261Right-handed alpha
Helix 15
AB6
A
262 264Right-handed 310
Helix 16
AB7
A
291 297Right-handed alpha
Helix 17
AB8
A
303 309Right-handed 310
Helix 18
AB9
A
310 324Right-handed alpha
Helix 19
AC1
A
325 348Right-handed alpha
Helix 20
AC2
A
372 376Right-handed 310
Helix 21
AC3
A
382 404Right-handed alpha
Helix 22
AC4
A
405 408Right-handed 310
Helix 23
AC5
A
411 417Right-handed alpha
Helix 24
AC6
A
422 446Right-handed alpha
Helix 25
AC7
A
450 464Right-handed alpha
Helix 26
AC8
A
465 469Right-handed 310
Helix 27
AC9
A
475 513Right-handed alpha
Helix 28
AD1
A
525 538Right-handed alpha
Helix 29
AD2
A
552 567Right-handed alpha
Helix 30
AD3
A
569 586Right-handed alpha
Helix 31
AD4
A
587 608Right-handed alpha
Helix 32
AD5
B
32 47Right-handed alpha
Helix 33
AD6
B
47 56Right-handed alpha
Helix 34
AD7
B
60 65Right-handed alpha
Helix 35
AD8
B
81 90Right-handed alpha
Helix 36
AD9
B
91 102Right-handed alpha
Helix 37
AE1
B
119 128Right-handed alpha
Helix 38
AE2
B
129 140Right-handed alpha
Helix 39
AE3
B
165 174Right-handed alpha
Helix 40
AE4
B
175 185Right-handed alpha
Helix 41
AE5
B
193 197Right-handed 310
Helix 42
AE6
B
198 205Right-handed alpha
Helix 43
AE7
B
209 222Right-handed alpha
Helix 44
AE8
B
242 251Right-handed alpha
Helix 45
AE9
B
252 261Right-handed alpha
Helix 46
AF1
B
262 264Right-handed 310
Helix 47
AF2
B
291 297Right-handed alpha
Helix 48
AF3
B
303 309Right-handed 310
Helix 49
AF4
B
310 324Right-handed alpha
Helix 50
AF5
B
325 348Right-handed alpha
Helix 51
AF6
B
372 376Right-handed 310
Helix 52
AF7
B
382 404Right-handed alpha
Helix 53
AF8
B
405 408Right-handed 310
Helix 54
AF9
B
411 417Right-handed alpha
Helix 55
AG1
B
422 446Right-handed alpha
Helix 56
AG2
B
450 464Right-handed alpha
Helix 57
AG3
B
465 469Right-handed 310
Helix 58
AG4
B
475 513Right-handed alpha
Helix 59
AG5
B
525 538Right-handed alpha
Helix 60
AG6
B
552 567Right-handed alpha
Helix 61
AG7
B
569 586Right-handed alpha
Helix 62
AG8
B
587 608Right-handed alpha
Helix 63
AG9
C
32 47Right-handed alpha
Helix 64
AH1
C
47 56Right-handed alpha
Helix 65
AH2
C
60 65Right-handed alpha
Helix 66
AH3
C
81 90Right-handed alpha
Helix 67
AH4
C
91 102Right-handed alpha
Helix 68
AH5
C
119 128Right-handed alpha
Helix 69
AH6
C
129 140Right-handed alpha
Helix 70
AH7
C
165 174Right-handed alpha
Helix 71
AH8
C
175 185Right-handed alpha
Helix 72
AH9
C
193 197Right-handed 310
Helix 73
AI1
C
198 205Right-handed alpha
Helix 74
AI2
C
209 222Right-handed alpha
Helix 75
AI3
C
242 251Right-handed alpha
Helix 76
AI4
C
252 261Right-handed alpha
Helix 77
AI5
C
262 264Right-handed 310
Helix 78
AI6
C
291 297Right-handed alpha
Helix 79
AI7
C
303 309Right-handed 310
Helix 80
AI8
C
310 324Right-handed alpha
Helix 81
AI9
C
325 348Right-handed alpha
Helix 82
AJ1
C
372 376Right-handed 310
Helix 83
AJ2
C
382 404Right-handed alpha
Helix 84
AJ3
C
405 408Right-handed 310
Helix 85
AJ4
C
411 417Right-handed alpha
Helix 86
AJ5
C
422 446Right-handed alpha
Helix 87
AJ6
C
450 464Right-handed alpha
Helix 88
AJ7
C
465 469Right-handed 310
Helix 89
AJ8
C
475 513Right-handed alpha
Helix 90
AJ9
C
525 538Right-handed alpha
Helix 91
AK1
C
552 567Right-handed alpha
Helix 92
AK2
C
569 586Right-handed alpha
Helix 93
AK3
C
587 608Right-handed alpha
Helix 94
AK4
D
32 47Right-handed alpha
Helix 95
AK5
D
47 56Right-handed alpha
Helix 96
AK6
D
60 65Right-handed alpha
Helix 97
AK7
D
81 90Right-handed alpha
Helix 98
AK8
D
91 102Right-handed alpha
Helix 99
AK9
D
119 128Right-handed alpha
Helix 100
AL1
D
129 140Right-handed alpha
Helix 101
AL2
D
165 174Right-handed alpha
Helix 102
AL3
D
175 185Right-handed alpha
Helix 103
AL4
D
193 197Right-handed 310
Helix 104
AL5
D
198 205Right-handed alpha
Helix 105
AL6
D
209 222Right-handed alpha
Helix 106
AL7
D
242 251Right-handed alpha
Helix 107
AL8
D
252 261Right-handed alpha
Helix 108
AL9
D
262 264Right-handed 310
Helix 109
AM1
D
291 297Right-handed alpha
Helix 110
AM2
D
303 309Right-handed 310
Helix 111
AM3
D
310 324Right-handed alpha
Helix 112
AM4
D
325 348Right-handed alpha
Helix 113
AM5
D
372 376Right-handed 310
Helix 114
AM6
D
382 404Right-handed alpha
Helix 115
AM7
D
405 408Right-handed 310
Helix 116
AM8
D
411 417Right-handed alpha
Helix 117
AM9
D
422 446Right-handed alpha
Helix 118
AN1
D
450 464Right-handed alpha
Helix 119
AN2
D
465 469Right-handed 310
Helix 120
AN3
D
475 513Right-handed alpha
Helix 121
AN4
D
525 538Right-handed alpha
Helix 122
AN5
D
552 567Right-handed alpha
Helix 123
AN6
D
569 586Right-handed alpha
Helix 124
AN7
D
587 608Right-handed alpha
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There are 4 sheets in PDB entry 6PBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 279first strand
Strand 2
A
630 636anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 279first strand
Strand 2
B
630 636anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 279first strand
Strand 2
C
630 636anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 279first strand
Strand 2
D
630 636anti-parallel
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