Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PBJ entry

There are 2 chains in PDB entry 6PBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASP 462
B
 GLY -1ASP 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6PBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
41 53Right-handed alpha
Helix 3
AA3
A
60 76Right-handed alpha
Helix 4
AA4
A
95 118Right-handed alpha
Helix 5
AA5
A
158 163Right-handed alpha
Helix 6
AA6
A
166 188Right-handed alpha
Helix 7
AA7
A
189 195Right-handed 310
Helix 8
AA8
A
196 208Right-handed alpha
Helix 9
AA9
A
210 213Right-handed 310
Helix 10
AB1
A
214 231Right-handed alpha
Helix 11
AB2
A
234 238Right-handed 310
Helix 12
AB3
A
251 258Right-handed alpha
Helix 13
AB4
A
290 299Right-handed alpha
Helix 14
AB5
A
312 324Right-handed alpha
Helix 15
AB6
A
339 356Right-handed alpha
Helix 16
AB7
A
383 402Right-handed alpha
Helix 17
AB8
A
445 462Right-handed alpha
Helix 18
AB9
B
-1 2Right-handed 310
Helix 19
AC1
B
19 32Right-handed alpha
Helix 20
AC2
B
41 53Right-handed alpha
Helix 21
AC3
B
60 76Right-handed alpha
Helix 22
AC4
B
95 118Right-handed alpha
Helix 23
AC5
B
158 163Right-handed alpha
Helix 24
AC6
B
167 188Right-handed alpha
Helix 25
AC7
B
189 195Right-handed 310
Helix 26
AC8
B
196 208Right-handed alpha
Helix 27
AC9
B
210 213Right-handed 310
Helix 28
AD1
B
214 231Right-handed alpha
Helix 29
AD2
B
234 238Right-handed 310
Helix 30
AD3
B
251 258Right-handed alpha
Helix 31
AD4
B
290 299Right-handed alpha
Helix 32
AD5
B
312 324Right-handed alpha
Helix 33
AD6
B
342 356Right-handed alpha
Helix 34
AD7
B
383 402Right-handed alpha
Helix 35
AD8
B
445 462Right-handed alpha
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There are 5 sheets in PDB entry 6PBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
B
4 8anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
121 126parallel
Strand 3
A
243 248parallel
Strand 4
A
278 281parallel
Strand 5
A
303 307parallel
Strand 6
A
332 336parallel
Strand 7
A
362 365parallel
Strand 8
A
407 411parallel
Strand 9
A
80 85parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
270 273anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
121 126parallel
Strand 3
B
243 248parallel
Strand 4
B
278 281parallel
Strand 5
B
303 307parallel
Strand 6
B
332 336parallel
Strand 7
B
362 365parallel
Strand 8
B
407 411parallel
Strand 9
B
80 85parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
270 273anti-parallel
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