Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PBM entry

There are 2 chains in PDB entry 6PBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6SER 431
B
 SER 7SER 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6PBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
64 70Right-handed 310
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
100 108Right-handed alpha
Helix 7
AA7
A
109 113Right-handed 310
Helix 8
AA8
A
127 136Right-handed alpha
Helix 9
AA9
A
184 195Right-handed alpha
Helix 10
AB1
A
205 211Right-handed alpha
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
225 233Right-handed alpha
Helix 13
AB4
A
252 273Right-handed alpha
Helix 14
AB5
A
279 288Right-handed alpha
Helix 15
AB6
A
297 303Right-handed alpha
Helix 16
AB7
A
304 307Right-handed 310
Helix 17
AB8
A
308 323Right-handed alpha
Helix 18
AB9
A
359 378Right-handed alpha
Helix 19
AC1
A
383 405Right-handed alpha
Helix 20
AC2
A
406 409Right-handed 310
Helix 21
AC3
A
410 414Right-handed 310
Helix 22
AC4
A
418 431Right-handed alpha
Helix 23
AC5
B
17 31Right-handed alpha
Helix 24
AC6
B
42 54Right-handed alpha
Helix 25
AC7
B
64 70Right-handed 310
Helix 26
AC8
B
81 85Right-handed 310
Helix 27
AC9
B
97 99Right-handed 310
Helix 28
AD1
B
100 108Right-handed alpha
Helix 29
AD2
B
109 113Right-handed 310
Helix 30
AD3
B
127 135Right-handed alpha
Helix 31
AD4
B
184 195Right-handed alpha
Helix 32
AD5
B
205 211Right-handed alpha
Helix 33
AD6
B
213 224Right-handed alpha
Helix 34
AD7
B
225 233Right-handed alpha
Helix 35
AD8
B
252 273Right-handed alpha
Helix 36
AD9
B
279 288Right-handed alpha
Helix 37
AE1
B
297 303Right-handed alpha
Helix 38
AE2
B
304 307Right-handed 310
Helix 39
AE3
B
308 323Right-handed alpha
Helix 40
AE4
B
359 379Right-handed alpha
Helix 41
AE5
B
383 405Right-handed alpha
Helix 42
AE6
B
406 409Right-handed 310
Helix 43
AE7
B
410 414Right-handed 310
Helix 44
AE8
B
418 431Right-handed alpha
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There are 6 sheets in PDB entry 6PBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
35 38parallel
Strand 3
A
11 14parallel
Strand 4
A
91 94parallel
Strand 5
A
118 121parallel
Strand 6
A
143 147parallel
Strand 7
A
173 178anti-parallel
Strand 8
A
199 202parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
164 170parallel
Strand 4
A
152 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
356 357anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
35 38parallel
Strand 3
B
11 14parallel
Strand 4
B
91 94parallel
Strand 5
B
118 121parallel
Strand 6
B
143 147parallel
Strand 7
B
173 178anti-parallel
Strand 8
B
199 202parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
164 170parallel
Strand 4
B
152 156anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 350first strand
Strand 2
B
356 357anti-parallel
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