Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PBX entry

There are 8 chains in PDB entry 6PBX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	GLN 720
B	GLN 8	ALA 147
C	GLN 14	GLN 720
E	GLN 14	GLN 720
G	GLN 14	GLN 720
D	GLN 8	ALA 147
F	GLN 8	ALA 147
H	GLN 8	ALA 147

There are152 helices in PDB entry 6PBX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	26	Right-handed alpha
Helix 2	AA2	A	46	54	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	76	90	Right-handed alpha
Helix 6	AA6	A	133	138	Right-handed alpha
Helix 7	AA7	A	146	158	Right-handed alpha
Helix 8	AA8	A	158	163	Right-handed alpha
Helix 9	AA9	A	178	193	Right-handed alpha
Helix 10	AB1	A	215	241	Right-handed alpha
Helix 11	AB2	A	248	271	Right-handed alpha
Helix 12	AB3	A	285	295	Right-handed alpha
Helix 13	AB4	A	295	303	Right-handed alpha
Helix 14	AB5	A	324	335	Right-handed 310
Helix 15	AB6	A	336	342	Right-handed alpha
Helix 16	AB7	A	348	379	Right-handed alpha
Helix 17	AB8	A	390	400	Right-handed alpha
Helix 18	AB9	A	418	435	Right-handed alpha
Helix 19	AC1	A	446	499	Right-handed alpha
Helix 20	AC2	A	502	520	Right-handed alpha
Helix 21	AC3	A	524	532	Right-handed alpha
Helix 22	AC4	A	533	545	Right-handed alpha
Helix 23	AC5	A	545	550	Right-handed alpha
Helix 24	AC6	A	559	568	Right-handed alpha
Helix 25	AC7	A	620	625	Right-handed alpha
Helix 26	AC8	A	647	657	Right-handed alpha
Helix 27	AC9	A	657	668	Right-handed alpha
Helix 28	AD1	A	682	692	Right-handed alpha
Helix 29	AD2	A	707	720	Right-handed alpha
Helix 30	AD3	B	9	11	Right-handed 310
Helix 31	AD4	B	12	20	Right-handed alpha
Helix 32	AD5	B	28	39	Right-handed alpha
Helix 33	AD6	B	44	56	Right-handed alpha
Helix 34	AD7	B	64	75	Right-handed alpha
Helix 35	AD8	B	79	93	Right-handed alpha
Helix 36	AD9	B	101	113	Right-handed alpha
Helix 37	AE1	B	117	129	Right-handed alpha
Helix 38	AE2	B	137	147	Right-handed alpha
Helix 39	AE3	C	16	26	Right-handed alpha
Helix 40	AE4	C	46	54	Right-handed alpha
Helix 41	AE5	C	56	61	Right-handed alpha
Helix 42	AE6	C	67	71	Right-handed 310
Helix 43	AE7	C	76	90	Right-handed alpha
Helix 44	AE8	C	133	138	Right-handed alpha
Helix 45	AE9	C	146	158	Right-handed alpha
Helix 46	AF1	C	158	163	Right-handed alpha
Helix 47	AF2	C	178	193	Right-handed alpha
Helix 48	AF3	C	215	241	Right-handed alpha
Helix 49	AF4	C	248	271	Right-handed alpha
Helix 50	AF5	C	285	295	Right-handed alpha
Helix 51	AF6	C	295	303	Right-handed alpha
Helix 52	AF7	C	324	335	Right-handed 310
Helix 53	AF8	C	336	342	Right-handed alpha
Helix 54	AF9	C	348	379	Right-handed alpha
Helix 55	AG1	C	390	400	Right-handed alpha
Helix 56	AG2	C	418	435	Right-handed alpha
Helix 57	AG3	C	446	499	Right-handed alpha
Helix 58	AG4	C	502	520	Right-handed alpha
Helix 59	AG5	C	524	532	Right-handed alpha
Helix 60	AG6	C	533	545	Right-handed alpha
Helix 61	AG7	C	545	550	Right-handed alpha
Helix 62	AG8	C	559	568	Right-handed alpha
Helix 63	AG9	C	620	625	Right-handed alpha
Helix 64	AH1	C	647	657	Right-handed alpha
Helix 65	AH2	C	657	668	Right-handed alpha
Helix 66	AH3	C	682	692	Right-handed alpha
Helix 67	AH4	C	707	720	Right-handed alpha
Helix 68	AH5	E	16	26	Right-handed alpha
Helix 69	AH6	E	46	54	Right-handed alpha
Helix 70	AH7	E	56	61	Right-handed alpha
Helix 71	AH8	E	67	71	Right-handed 310
Helix 72	AH9	E	76	90	Right-handed alpha
Helix 73	AI1	E	133	138	Right-handed alpha
Helix 74	AI2	E	146	158	Right-handed alpha
Helix 75	AI3	E	158	163	Right-handed alpha
Helix 76	AI4	E	178	193	Right-handed alpha
Helix 77	AI5	E	215	241	Right-handed alpha
Helix 78	AI6	E	248	271	Right-handed alpha
Helix 79	AI7	E	285	295	Right-handed alpha
Helix 80	AI8	E	295	303	Right-handed alpha
Helix 81	AI9	E	324	335	Right-handed 310
Helix 82	AJ1	E	336	342	Right-handed alpha
Helix 83	AJ2	E	348	379	Right-handed alpha
Helix 84	AJ3	E	390	400	Right-handed alpha
Helix 85	AJ4	E	418	435	Right-handed alpha
Helix 86	AJ5	E	446	499	Right-handed alpha
Helix 87	AJ6	E	502	520	Right-handed alpha
Helix 88	AJ7	E	524	532	Right-handed alpha
Helix 89	AJ8	E	533	545	Right-handed alpha
Helix 90	AJ9	E	545	550	Right-handed alpha
Helix 91	AK1	E	559	568	Right-handed alpha
Helix 92	AK2	E	620	625	Right-handed alpha
Helix 93	AK3	E	647	657	Right-handed alpha
Helix 94	AK4	E	657	668	Right-handed alpha
Helix 95	AK5	E	682	692	Right-handed alpha
Helix 96	AK6	E	707	720	Right-handed alpha
Helix 97	AK7	G	16	26	Right-handed alpha
Helix 98	AK8	G	46	54	Right-handed alpha
Helix 99	AK9	G	56	61	Right-handed alpha
Helix 100	AL1	G	67	71	Right-handed 310
Helix 101	AL2	G	76	90	Right-handed alpha
Helix 102	AL3	G	133	138	Right-handed alpha
Helix 103	AL4	G	146	158	Right-handed alpha
Helix 104	AL5	G	158	163	Right-handed alpha
Helix 105	AL6	G	178	193	Right-handed alpha
Helix 106	AL7	G	215	241	Right-handed alpha
Helix 107	AL8	G	248	271	Right-handed alpha
Helix 108	AL9	G	285	295	Right-handed alpha
Helix 109	AM1	G	295	303	Right-handed alpha
Helix 110	AM2	G	324	335	Right-handed 310
Helix 111	AM3	G	336	342	Right-handed alpha
Helix 112	AM4	G	348	379	Right-handed alpha
Helix 113	AM5	G	390	400	Right-handed alpha
Helix 114	AM6	G	418	435	Right-handed alpha
Helix 115	AM7	G	446	499	Right-handed alpha
Helix 116	AM8	G	502	520	Right-handed alpha
Helix 117	AM9	G	524	532	Right-handed alpha
Helix 118	AN1	G	533	545	Right-handed alpha
Helix 119	AN2	G	545	550	Right-handed alpha
Helix 120	AN3	G	559	568	Right-handed alpha
Helix 121	AN4	G	620	625	Right-handed alpha
Helix 122	AN5	G	647	657	Right-handed alpha
Helix 123	AN6	G	657	668	Right-handed alpha
Helix 124	AN7	G	682	692	Right-handed alpha
Helix 125	AN8	G	707	720	Right-handed alpha
Helix 126	AN9	D	9	11	Right-handed 310
Helix 127	AO1	D	12	20	Right-handed alpha
Helix 128	AO2	D	28	39	Right-handed alpha
Helix 129	AO3	D	44	56	Right-handed alpha
Helix 130	AO4	D	64	75	Right-handed alpha
Helix 131	AO5	D	79	93	Right-handed alpha
Helix 132	AO6	D	101	113	Right-handed alpha
Helix 133	AO7	D	117	129	Right-handed alpha
Helix 134	AO8	D	137	147	Right-handed alpha
Helix 135	AO9	F	9	11	Right-handed 310
Helix 136	AP1	F	12	20	Right-handed alpha
Helix 137	AP2	F	28	39	Right-handed alpha
Helix 138	AP3	F	44	56	Right-handed alpha
Helix 139	AP4	F	64	75	Right-handed alpha
Helix 140	AP5	F	79	93	Right-handed alpha
Helix 141	AP6	F	101	113	Right-handed alpha
Helix 142	AP7	F	117	129	Right-handed alpha
Helix 143	AP8	F	137	147	Right-handed alpha
Helix 144	AP9	H	9	11	Right-handed 310
Helix 145	AQ1	H	12	20	Right-handed alpha
Helix 146	AQ2	H	28	39	Right-handed alpha
Helix 147	AQ3	H	44	56	Right-handed alpha
Helix 148	AQ4	H	64	75	Right-handed alpha
Helix 149	AQ5	H	79	93	Right-handed alpha
Helix 150	AQ6	H	101	113	Right-handed alpha
Helix 151	AQ7	H	117	129	Right-handed alpha
Helix 152	AQ8	H	137	147	Right-handed alpha

There are 16 sheets in PDB entry 6PBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	107	116	anti-parallel
Strand 5	A	93	99	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	575	first strand
Strand 2	A	640	646	anti-parallel
Strand 3	A	590	596	anti-parallel
Strand 4	A	615	618	anti-parallel
Strand 5	A	672	673	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	628	629	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	611	first strand
Strand 2	A	599	602	anti-parallel
Strand 3	A	633	636	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	29	34	anti-parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	107	116	anti-parallel
Strand 5	C	93	99	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	571	575	first strand
Strand 2	C	640	646	anti-parallel
Strand 3	C	590	596	anti-parallel
Strand 4	C	615	618	anti-parallel
Strand 5	C	672	673	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	587	588	first strand
Strand 2	C	628	629	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	607	611	first strand
Strand 2	C	599	602	anti-parallel
Strand 3	C	633	636	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	29	34	anti-parallel
Strand 3	E	125	130	anti-parallel
Strand 4	E	107	116	anti-parallel
Strand 5	E	93	99	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	571	575	first strand
Strand 2	E	640	646	anti-parallel
Strand 3	E	590	596	anti-parallel
Strand 4	E	615	618	anti-parallel
Strand 5	E	672	673	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	587	588	first strand
Strand 2	E	628	629	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	607	611	first strand
Strand 2	E	599	602	anti-parallel
Strand 3	E	633	636	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	G	29	34	anti-parallel
Strand 3	G	125	130	anti-parallel
Strand 4	G	107	116	anti-parallel
Strand 5	G	93	99	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	571	575	first strand
Strand 2	G	640	646	anti-parallel
Strand 3	G	590	596	anti-parallel
Strand 4	G	615	618	anti-parallel
Strand 5	G	672	673	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	587	588	first strand
Strand 2	G	628	629	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	607	611	first strand
Strand 2	G	599	602	anti-parallel
Strand 3	G	633	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PBX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBX