Analysis of interatomic Contacts of Structural Units in PDB entry:
6PC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PC2 entry

There are 2 chains in PDB entry 6PC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 484
B
 LYS 3ALA 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 6PC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 73Right-handed alpha
Helix 2
AA2
A
83 88Right-handed alpha
Helix 3
AA3
A
91 103Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
161 169Right-handed alpha
Helix 6
AA6
A
170 173Right-handed 310
Helix 7
AA7
A
175 188Right-handed alpha
Helix 8
AA8
A
201 215Right-handed alpha
Helix 9
AA9
A
229 240Right-handed alpha
Helix 10
AB1
A
243 250Right-handed alpha
Helix 11
AB2
A
253 255Right-handed 310
Helix 12
AB3
A
256 275Right-handed alpha
Helix 13
AB4
A
285 296Right-handed alpha
Helix 14
AB5
A
297 300Right-handed 310
Helix 15
AB6
A
308 319Right-handed alpha
Helix 16
AB7
A
322 338Right-handed alpha
Helix 17
AB8
A
339 344Right-handed alpha
Helix 18
AB9
A
346 348Right-handed 310
Helix 19
AC1
A
349 360Right-handed alpha
Helix 20
AC2
A
361 366Right-handed 310
Helix 21
AC3
A
370 383Right-handed alpha
Helix 22
AC4
A
388 401Right-handed alpha
Helix 23
AC5
A
421 439Right-handed alpha
Helix 24
AC6
A
463 469Right-handed alpha
Helix 25
AC7
B
52 73Right-handed alpha
Helix 26
AC8
B
83 88Right-handed alpha
Helix 27
AC9
B
91 103Right-handed alpha
Helix 28
AD1
B
111 124Right-handed alpha
Helix 29
AD2
B
161 169Right-handed alpha
Helix 30
AD3
B
170 173Right-handed 310
Helix 31
AD4
B
175 188Right-handed alpha
Helix 32
AD5
B
201 215Right-handed alpha
Helix 33
AD6
B
229 239Right-handed alpha
Helix 34
AD7
B
240 242Right-handed 310
Helix 35
AD8
B
243 250Right-handed alpha
Helix 36
AD9
B
259 275Right-handed alpha
Helix 37
AE1
B
285 296Right-handed alpha
Helix 38
AE2
B
308 319Right-handed alpha
Helix 39
AE3
B
322 338Right-handed alpha
Helix 40
AE4
B
339 344Right-handed alpha
Helix 41
AE5
B
346 348Right-handed 310
Helix 42
AE6
B
349 360Right-handed alpha
Helix 43
AE7
B
361 366Right-handed 310
Helix 44
AE8
B
370 383Right-handed alpha
Helix 45
AE9
B
388 401Right-handed alpha
Helix 46
AF1
B
421 439Right-handed alpha
Helix 47
AF2
B
463 469Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6PC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
77 82parallel
Strand 5
A
107 109parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 158first strand
Strand 2
A
142 148anti-parallel
Strand 3
A
131 137anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
278 281parallel
Strand 6
A
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 450first strand
Strand 2
A
454 458anti-parallel
Strand 3
A
480 484parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
77 82parallel
Strand 5
B
107 109parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 158first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
131 137anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
278 281parallel
Strand 6
B
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 450first strand
Strand 2
B
454 458anti-parallel
Strand 3
B
480 484parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il