Analysis of interatomic Contacts of Structural Units in PDB entry:
6PCM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PCM entry

There are 2 chains in PDB entry 6PCM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 13	ALA 838
B	ASN 13	GLY 605

There are 58 helices in PDB entry 6PCM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	33	Right-handed alpha
Helix 2	AA2	A	57	63	Right-handed alpha
Helix 3	AA3	A	72	75	Right-handed 310
Helix 4	AA4	A	86	98	Right-handed alpha
Helix 5	AA5	A	110	125	Right-handed alpha
Helix 6	AA6	A	139	149	Right-handed alpha
Helix 7	AA7	A	154	183	Right-handed alpha
Helix 8	AA8	A	192	209	Right-handed alpha
Helix 9	AA9	A	223	227	Right-handed 310
Helix 10	AB1	A	270	281	Right-handed alpha
Helix 11	AB2	A	305	317	Right-handed alpha
Helix 12	AB3	A	320	334	Right-handed alpha
Helix 13	AB4	A	348	363	Right-handed alpha
Helix 14	AB5	A	398	403	Right-handed 310
Helix 15	AB6	A	407	424	Right-handed alpha
Helix 16	AB7	A	460	466	Right-handed 310
Helix 17	AB8	A	513	523	Right-handed alpha
Helix 18	AB9	A	531	541	Right-handed alpha
Helix 19	AC1	A	555	569	Right-handed alpha
Helix 20	AC2	A	569	574	Right-handed alpha
Helix 21	AC3	A	575	590	Right-handed alpha
Helix 22	AC4	A	594	605	Right-handed alpha
Helix 23	AC5	A	619	626	Right-handed alpha
Helix 24	AC6	A	632	638	Right-handed alpha
Helix 25	AC7	A	686	690	Right-handed 310
Helix 26	AC8	A	691	701	Right-handed alpha
Helix 27	AC9	A	775	783	Right-handed alpha
Helix 28	AD1	A	823	828	Right-handed alpha
Helix 29	AD2	A	829	837	Right-handed alpha
Helix 30	AD3	B	22	33	Right-handed alpha
Helix 31	AD4	B	57	61	Right-handed 310
Helix 32	AD5	B	63	67	Right-handed 310
Helix 33	AD6	B	86	98	Right-handed alpha
Helix 34	AD7	B	110	124	Right-handed alpha
Helix 35	AD8	B	139	149	Right-handed alpha
Helix 36	AD9	B	154	183	Right-handed alpha
Helix 37	AE1	B	192	209	Right-handed alpha
Helix 38	AE2	B	270	281	Right-handed alpha
Helix 39	AE3	B	305	317	Right-handed alpha
Helix 40	AE4	B	320	334	Right-handed alpha
Helix 41	AE5	B	348	363	Right-handed alpha
Helix 42	AE6	B	398	403	Right-handed 310
Helix 43	AE7	B	407	424	Right-handed alpha
Helix 44	AE8	B	460	465	Right-handed 310
Helix 45	AE9	B	513	525	Right-handed alpha
Helix 46	AF1	B	531	542	Right-handed alpha
Helix 47	AF2	B	555	569	Right-handed alpha
Helix 48	AF3	B	569	574	Right-handed alpha
Helix 49	AF4	B	574	591	Right-handed alpha
Helix 50	AF5	B	594	604	Right-handed alpha
Helix 51	AF6	B	618	625	Right-handed alpha
Helix 52	AF7	B	626	629	Right-handed 310
Helix 53	AF8	B	632	638	Right-handed alpha
Helix 54	AF9	B	686	690	Right-handed 310
Helix 55	AG1	B	691	701	Right-handed alpha
Helix 56	AG2	B	775	784	Right-handed alpha
Helix 57	AG3	B	823	829	Right-handed alpha
Helix 58	AG4	B	831	836	Right-handed alpha

There are 18 sheets in PDB entry 6PCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	16	20	parallel
Strand 3	A	102	105	parallel
Strand 4	A	130	132	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	81	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	77	78	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	246	248	parallel
Strand 3	A	236	243	anti-parallel
Strand 4	A	448	459	anti-parallel
Strand 5	A	429	439	anti-parallel
Strand 6	A	285	294	anti-parallel
Strand 7	A	493	495	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	429	439	anti-parallel
Strand 3	A	448	459	anti-parallel
Strand 4	A	236	243	anti-parallel
Strand 5	A	214	222	anti-parallel
Strand 6	A	499	505	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	547	first strand
Strand 2	A	552	554	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	A	649	653	anti-parallel
Strand 3	A	660	665	anti-parallel
Strand 4	A	675	680	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	710	first strand
Strand 2	A	717	722	anti-parallel
Strand 3	A	727	731	anti-parallel
Strand 4	A	762	764	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	791	first strand
Strand 2	A	798	804	anti-parallel
Strand 3	A	807	812	anti-parallel
Strand 4	A	815	818	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	16	20	parallel
Strand 3	B	103	105	parallel
Strand 4	B	130	132	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	81	82	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	77	78	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	246	248	parallel
Strand 3	B	235	243	anti-parallel
Strand 4	B	214	223	anti-parallel
Strand 5	B	493	505	anti-parallel
Strand 6	B	285	290	anti-parallel
Strand 7	B	429	439	anti-parallel
Strand 8	B	293	294	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	243	first strand
Strand 2	B	448	459	anti-parallel
Strand 3	B	429	439	anti-parallel
Strand 4	B	297	298	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	548	first strand
Strand 2	B	551	554	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	649	653	anti-parallel
Strand 3	B	660	665	anti-parallel
Strand 4	B	675	680	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	710	first strand
Strand 2	B	717	723	anti-parallel
Strand 3	B	726	731	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	804	first strand
Strand 2	B	807	812	anti-parallel
Strand 3	B	815	818	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PCM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PCM