Analysis of interatomic Contacts of Structural Units in PDB entry:
6PCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PCV entry

There are 3 chains in PDB entry 6PCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 506	PRO 1654
B	SER 2	ASN 340
G	ASN 5	PHE 66

There are 27 helices in PDB entry 6PCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	509	522	Right-handed alpha
Helix 2	AA2	A	545	556	Right-handed alpha
Helix 3	AA3	A	560	574	Right-handed alpha
Helix 4	AA4	A	596	603	Right-handed alpha
Helix 5	AA5	A	655	661	Right-handed alpha
Helix 6	AA6	A	680	694	Right-handed alpha
Helix 7	AA7	A	738	744	Right-handed alpha
Helix 8	AA8	A	764	769	Right-handed alpha
Helix 9	AA9	A	791	803	Right-handed alpha
Helix 10	AB1	A	879	895	Right-handed alpha
Helix 11	AB2	A	933	947	Right-handed alpha
Helix 12	AB3	A	964	968	Right-handed 310
Helix 13	AB4	A	1319	1347	Right-handed alpha
Helix 14	AB5	A	1359	1375	Right-handed alpha
Helix 15	AB6	A	1389	1407	Right-handed alpha
Helix 16	AB7	A	1444	1450	Right-handed alpha
Helix 17	AB8	A	1454	1458	Right-handed 310
Helix 18	AB9	A	1480	1518	Right-handed alpha
Helix 19	AC1	A	1528	1551	Right-handed alpha
Helix 20	AC2	A	1563	1575	Right-handed alpha
Helix 21	AC3	A	1587	1605	Right-handed alpha
Helix 22	AC4	A	1612	1623	Right-handed alpha
Helix 23	AC5	A	1627	1634	Right-handed alpha
Helix 24	AC6	B	3	26	Right-handed alpha
Helix 25	AC7	B	29	34	Right-handed alpha
Helix 26	AC8	G	6	25	Right-handed alpha
Helix 27	AC9	G	29	44	Right-handed alpha

There are 13 sheets in PDB entry 6PCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	534	first strand
Strand 2	A	537	539	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	544	first strand
Strand 2	A	592	595	anti-parallel
Strand 3	A	577	579	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	671	first strand
Strand 2	A	698	703	anti-parallel
Strand 3	A	616	628	anti-parallel
Strand 4	A	852	860	anti-parallel
Strand 5	A	866	874	anti-parallel
Strand 6	A	973	982	anti-parallel
Strand 7	A	1015	1026	anti-parallel
Strand 8	A	1577	1583	parallel
Strand 9	A	1376	1382	parallel
Strand 10	A	1462	1466	parallel
Strand 11	A	1409	1415	anti-parallel
Strand 12	A	1437	1443	parallel
Strand 13	A	1427	1432	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	640	first strand
Strand 2	A	647	651	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	713	first strand
Strand 2	A	841	847	anti-parallel
Strand 3	A	750	754	anti-parallel
Strand 4	A	757	758	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	725	first strand
Strand 2	A	729	735	anti-parallel
Strand 3	A	787	789	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	210	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PCV