Analysis of interatomic Contacts of Structural Units in PDB entry:
6PD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PD0 entry

There are 2 chains in PDB entry 6PD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 194GLN 559
B
 MET 194GLN 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6PD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 219Right-handed alpha
Helix 2
AA2
A
246 253Right-handed alpha
Helix 3
AA3
A
258 264Right-handed alpha
Helix 4
AA4
A
277 287Right-handed alpha
Helix 5
AA5
A
294 299Right-handed alpha
Helix 6
AA6
A
303 306Right-handed 310
Helix 7
AA7
A
307 315Right-handed alpha
Helix 8
AA8
A
328 330Right-handed 310
Helix 9
AA9
A
331 339Right-handed alpha
Helix 10
AB1
A
366 380Right-handed alpha
Helix 11
AB2
A
409 432Right-handed alpha
Helix 12
AB3
A
462 466Right-handed alpha
Helix 13
AB4
A
493 504Right-handed alpha
Helix 14
AB5
A
507 511Right-handed 310
Helix 15
AB6
A
516 522Right-handed alpha
Helix 16
AB7
B
202 219Right-handed alpha
Helix 17
AB8
B
246 253Right-handed alpha
Helix 18
AB9
B
258 264Right-handed alpha
Helix 19
AC1
B
277 287Right-handed alpha
Helix 20
AC2
B
295 300Right-handed 310
Helix 21
AC3
B
303 306Right-handed 310
Helix 22
AC4
B
307 315Right-handed alpha
Helix 23
AC5
B
328 330Right-handed 310
Helix 24
AC6
B
331 339Right-handed alpha
Helix 25
AC7
B
366 380Right-handed alpha
Helix 26
AC8
B
409 432Right-handed alpha
Helix 27
AC9
B
462 467Right-handed alpha
Helix 28
AD1
B
493 505Right-handed alpha
Helix 29
AD2
B
507 511Right-handed 310
Helix 30
AD3
B
516 522Right-handed alpha
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There are 6 sheets in PDB entry 6PD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 323first strand
Strand 2
A
386 392parallel
Strand 3
A
236 242parallel
Strand 4
A
435 441parallel
Strand 5
A
467 475anti-parallel
Strand 6
A
266 272anti-parallel
Strand 7
A
486 488parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
363 365anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
536 541anti-parallel
Strand 3
A
544 549anti-parallel
Strand 4
A
555 556anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 323first strand
Strand 2
B
386 392parallel
Strand 3
B
236 242parallel
Strand 4
B
435 441parallel
Strand 5
B
470 475anti-parallel
Strand 6
B
266 268anti-parallel
Strand 7
B
486 488parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
363 365anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
536 541anti-parallel
Strand 3
B
544 549anti-parallel
Strand 4
B
555 556anti-parallel
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