Analysis of interatomic Contacts of Structural Units in PDB entry:
6PD2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PD2 entry

There are 4 chains in PDB entry 6PD2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 615
B	MET 1	GLY 615
C	MET 1	VAL 616
D	MET 1	GLY 615

There are111 helices in PDB entry 6PD2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	21	Right-handed 310
Helix 2	AA2	A	24	27	Right-handed 310
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	59	69	Right-handed alpha
Helix 5	AA5	A	79	83	Right-handed 310
Helix 6	AA6	A	84	93	Right-handed alpha
Helix 7	AA7	A	94	96	Right-handed 310
Helix 8	AA8	A	111	119	Right-handed alpha
Helix 9	AA9	A	154	158	Right-handed 310
Helix 10	AB1	A	172	186	Right-handed alpha
Helix 11	AB2	A	194	203	Right-handed alpha
Helix 12	AB3	A	223	233	Right-handed alpha
Helix 13	AB4	A	233	245	Right-handed alpha
Helix 14	AB5	A	261	267	Right-handed alpha
Helix 15	AB6	A	277	294	Right-handed alpha
Helix 16	AB7	A	301	303	Right-handed 310
Helix 17	AB8	A	313	326	Right-handed alpha
Helix 18	AB9	A	338	351	Right-handed alpha
Helix 19	AC1	A	367	377	Right-handed alpha
Helix 20	AC2	A	397	408	Right-handed alpha
Helix 21	AC3	A	456	462	Right-handed alpha
Helix 22	AC4	A	473	485	Right-handed alpha
Helix 23	AC5	A	492	510	Right-handed alpha
Helix 24	AC6	A	510	532	Right-handed alpha
Helix 25	AC7	A	539	543	Right-handed 310
Helix 26	AC8	A	559	570	Right-handed alpha
Helix 27	AC9	A	594	612	Right-handed alpha
Helix 28	AD1	B	13	21	Right-handed 310
Helix 29	AD2	B	24	27	Right-handed 310
Helix 30	AD3	B	35	46	Right-handed alpha
Helix 31	AD4	B	59	69	Right-handed alpha
Helix 32	AD5	B	79	83	Right-handed 310
Helix 33	AD6	B	84	94	Right-handed alpha
Helix 34	AD7	B	111	120	Right-handed alpha
Helix 35	AD8	B	154	158	Right-handed 310
Helix 36	AD9	B	172	186	Right-handed alpha
Helix 37	AE1	B	194	203	Right-handed alpha
Helix 38	AE2	B	223	233	Right-handed alpha
Helix 39	AE3	B	233	244	Right-handed alpha
Helix 40	AE4	B	261	267	Right-handed alpha
Helix 41	AE5	B	277	295	Right-handed alpha
Helix 42	AE6	B	301	303	Right-handed 310
Helix 43	AE7	B	313	325	Right-handed alpha
Helix 44	AE8	B	338	351	Right-handed alpha
Helix 45	AE9	B	367	376	Right-handed alpha
Helix 46	AF1	B	397	408	Right-handed alpha
Helix 47	AF2	B	456	461	Right-handed alpha
Helix 48	AF3	B	473	485	Right-handed alpha
Helix 49	AF4	B	492	510	Right-handed alpha
Helix 50	AF5	B	510	532	Right-handed alpha
Helix 51	AF6	B	539	543	Right-handed 310
Helix 52	AF7	B	559	570	Right-handed alpha
Helix 53	AF8	B	594	612	Right-handed alpha
Helix 54	AF9	C	13	21	Right-handed 310
Helix 55	AG1	C	24	27	Right-handed 310
Helix 56	AG2	C	35	46	Right-handed alpha
Helix 57	AG3	C	59	69	Right-handed alpha
Helix 58	AG4	C	79	83	Right-handed 310
Helix 59	AG5	C	84	93	Right-handed alpha
Helix 60	AG6	C	94	96	Right-handed 310
Helix 61	AG7	C	111	120	Right-handed alpha
Helix 62	AG8	C	154	158	Right-handed 310
Helix 63	AG9	C	172	186	Right-handed alpha
Helix 64	AH1	C	194	203	Right-handed alpha
Helix 65	AH2	C	223	233	Right-handed alpha
Helix 66	AH3	C	233	245	Right-handed alpha
Helix 67	AH4	C	261	267	Right-handed alpha
Helix 68	AH5	C	277	292	Right-handed alpha
Helix 69	AH6	C	293	296	Right-handed 310
Helix 70	AH7	C	301	303	Right-handed 310
Helix 71	AH8	C	313	325	Right-handed alpha
Helix 72	AH9	C	338	351	Right-handed alpha
Helix 73	AI1	C	367	377	Right-handed alpha
Helix 74	AI2	C	397	408	Right-handed alpha
Helix 75	AI3	C	426	431	Right-handed alpha
Helix 76	AI4	C	456	462	Right-handed alpha
Helix 77	AI5	C	463	465	Right-handed 310
Helix 78	AI6	C	473	485	Right-handed alpha
Helix 79	AI7	C	492	510	Right-handed alpha
Helix 80	AI8	C	510	533	Right-handed alpha
Helix 81	AI9	C	539	543	Right-handed 310
Helix 82	AJ1	C	559	570	Right-handed alpha
Helix 83	AJ2	C	594	612	Right-handed alpha
Helix 84	AJ3	D	24	27	Right-handed 310
Helix 85	AJ4	D	35	46	Right-handed alpha
Helix 86	AJ5	D	59	69	Right-handed alpha
Helix 87	AJ6	D	79	83	Right-handed 310
Helix 88	AJ7	D	84	93	Right-handed alpha
Helix 89	AJ8	D	94	96	Right-handed 310
Helix 90	AJ9	D	111	120	Right-handed alpha
Helix 91	AK1	D	154	158	Right-handed 310
Helix 92	AK2	D	172	186	Right-handed alpha
Helix 93	AK3	D	194	203	Right-handed alpha
Helix 94	AK4	D	223	233	Right-handed alpha
Helix 95	AK5	D	233	244	Right-handed alpha
Helix 96	AK6	D	261	267	Right-handed alpha
Helix 97	AK7	D	277	294	Right-handed alpha
Helix 98	AK8	D	301	303	Right-handed 310
Helix 99	AK9	D	313	325	Right-handed alpha
Helix 100	AL1	D	338	351	Right-handed alpha
Helix 101	AL2	D	367	377	Right-handed alpha
Helix 102	AL3	D	397	408	Right-handed alpha
Helix 103	AL4	D	426	431	Right-handed alpha
Helix 104	AL5	D	456	462	Right-handed alpha
Helix 105	AL6	D	463	465	Right-handed 310
Helix 106	AL7	D	473	485	Right-handed alpha
Helix 107	AL8	D	492	510	Right-handed alpha
Helix 108	AL9	D	510	532	Right-handed alpha
Helix 109	AM1	D	539	543	Right-handed 310
Helix 110	AM2	D	559	570	Right-handed alpha
Helix 111	AM3	D	594	612	Right-handed alpha

There are 28 sheets in PDB entry 6PD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	50	55	parallel
Strand 3	A	4	9	parallel
Strand 4	A	100	104	parallel
Strand 5	A	163	171	anti-parallel
Strand 6	A	139	142	anti-parallel
Strand 7	A	148	152	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	50	55	parallel
Strand 3	A	4	9	parallel
Strand 4	A	100	104	parallel
Strand 5	A	163	171	anti-parallel
Strand 6	A	125	129	anti-parallel
Strand 7	A	209	213	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	33	34	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	572	573	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	311	first strand
Strand 2	A	449	455	anti-parallel
Strand 3	A	434	438	anti-parallel
Strand 4	A	411	415	parallel
Strand 5	A	382	386	parallel
Strand 6	A	332	336	parallel
Strand 7	A	355	359	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	551	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	575	576	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	50	55	parallel
Strand 3	B	4	8	parallel
Strand 4	B	100	104	parallel
Strand 5	B	163	171	anti-parallel
Strand 6	B	139	142	anti-parallel
Strand 7	B	148	152	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	50	55	parallel
Strand 3	B	4	8	parallel
Strand 4	B	100	104	parallel
Strand 5	B	163	171	anti-parallel
Strand 6	B	125	129	anti-parallel
Strand 7	B	209	213	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	33	34	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	218	220	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	572	573	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	311	first strand
Strand 2	B	449	455	anti-parallel
Strand 3	B	434	438	anti-parallel
Strand 4	B	411	415	parallel
Strand 5	B	382	386	parallel
Strand 6	B	332	336	parallel
Strand 7	B	355	359	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	551	first strand
Strand 2	B	584	588	anti-parallel
Strand 3	B	575	576	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	76	first strand
Strand 2	C	50	55	parallel
Strand 3	C	4	8	parallel
Strand 4	C	100	104	parallel
Strand 5	C	163	171	anti-parallel
Strand 6	C	139	142	anti-parallel
Strand 7	C	148	152	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	76	first strand
Strand 2	C	50	55	parallel
Strand 3	C	4	8	parallel
Strand 4	C	100	104	parallel
Strand 5	C	163	171	anti-parallel
Strand 6	C	125	129	anti-parallel
Strand 7	C	209	213	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	33	34	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	218	220	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	572	573	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	311	first strand
Strand 2	C	449	455	anti-parallel
Strand 3	C	434	438	anti-parallel
Strand 4	C	411	415	parallel
Strand 5	C	382	386	parallel
Strand 6	C	332	336	parallel
Strand 7	C	355	359	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	551	first strand
Strand 2	C	584	588	anti-parallel
Strand 3	C	575	576	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	76	first strand
Strand 2	D	50	55	parallel
Strand 3	D	4	9	parallel
Strand 4	D	100	104	parallel
Strand 5	D	163	171	anti-parallel
Strand 6	D	139	142	anti-parallel
Strand 7	D	148	152	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	76	first strand
Strand 2	D	50	55	parallel
Strand 3	D	4	9	parallel
Strand 4	D	100	104	parallel
Strand 5	D	163	171	anti-parallel
Strand 6	D	125	129	anti-parallel
Strand 7	D	209	213	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	33	34	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	218	220	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	572	573	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	311	first strand
Strand 2	D	449	455	anti-parallel
Strand 3	D	434	438	anti-parallel
Strand 4	D	411	415	parallel
Strand 5	D	382	386	parallel
Strand 6	D	332	336	parallel
Strand 7	D	355	359	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	551	first strand
Strand 2	D	584	588	anti-parallel
Strand 3	D	575	576	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PD2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PD2