Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDK entry

There is 1 chain in PDB entry 6PDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 86LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6PDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 119Right-handed 310
Helix 2
AA2
A
155 157Right-handed 310
Helix 3
AA3
A
171 173Right-handed 310
Helix 4
AA4
A
174 180Right-handed alpha
Helix 5
AA5
A
191 195Right-handed 310
Helix 6
AA6
A
199 203Right-handed 310
Helix 7
AA7
A
218 234Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
311 314Right-handed 310
Helix 10
AB1
A
315 331Right-handed alpha
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There are 4 sheets in PDB entry 6PDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
96 99anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
110 115anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
302 309anti-parallel
Strand 5
A
290 297anti-parallel
Strand 6
A
257 263anti-parallel
Strand 7
A
246 251anti-parallel
Strand 8
A
213 216anti-parallel
Strand 9
A
204 205anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
279 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il