Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PDL entry

There are 8 chains in PDB entry 6PDL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 174	SER 602
B	SER 27	ASP 167
C	GLY 177	SER 602
D	SER 27	ASP 167
E	ILE 174	SER 602
F	SER 27	ASP 167
G	GLY 177	SER 602
H	SER 27	ASP 167

There are 33 helices in PDB entry 6PDL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	275	277	Right-handed 310
Helix 2	AA2	A	306	310	Right-handed 310
Helix 3	AA3	A	373	375	Right-handed 310
Helix 4	AA4	A	378	382	Right-handed 310
Helix 5	AA5	A	393	398	Right-handed alpha
Helix 6	AA6	B	82	89	Right-handed alpha
Helix 7	AA7	B	141	145	Right-handed 310
Helix 8	AA8	B	150	157	Right-handed alpha
Helix 9	AA9	C	275	277	Right-handed 310
Helix 10	AB1	C	306	310	Right-handed 310
Helix 11	AB2	C	373	375	Right-handed 310
Helix 12	AB3	C	378	382	Right-handed 310
Helix 13	AB4	C	393	398	Right-handed alpha
Helix 14	AB5	D	82	89	Right-handed alpha
Helix 15	AB6	D	141	145	Right-handed 310
Helix 16	AB7	D	150	157	Right-handed alpha
Helix 17	AB8	E	275	277	Right-handed 310
Helix 18	AB9	E	306	310	Right-handed 310
Helix 19	AC1	E	373	375	Right-handed 310
Helix 20	AC2	E	378	382	Right-handed 310
Helix 21	AC3	E	393	398	Right-handed alpha
Helix 22	AC4	F	82	89	Right-handed alpha
Helix 23	AC5	F	141	145	Right-handed 310
Helix 24	AC6	F	151	156	Right-handed alpha
Helix 25	AC7	G	275	277	Right-handed 310
Helix 26	AC8	G	306	310	Right-handed 310
Helix 27	AC9	G	373	375	Right-handed 310
Helix 28	AD1	G	378	382	Right-handed 310
Helix 29	AD2	G	393	398	Right-handed alpha
Helix 30	AD3	H	69	73	Right-handed 310
Helix 31	AD4	H	82	89	Right-handed alpha
Helix 32	AD5	H	141	145	Right-handed 310
Helix 33	AD6	H	150	156	Right-handed alpha

There are 36 sheets in PDB entry 6PDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	557	568	anti-parallel
Strand 3	A	571	581	anti-parallel
Strand 4	A	589	596	anti-parallel
Strand 5	A	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	225	first strand
Strand 2	A	228	237	anti-parallel
Strand 3	A	244	257	anti-parallel
Strand 4	A	263	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	287	first strand
Strand 2	A	290	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	425	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	425	430	parallel
Strand 3	A	407	417	anti-parallel
Strand 4	A	361	371	anti-parallel
Strand 5	A	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	465	471	anti-parallel
Strand 4	A	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	515	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	535	540	anti-parallel
Strand 4	A	545	550	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	57	62	parallel
Strand 3	B	108	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	159	164	parallel
Strand 3	B	130	136	anti-parallel
Strand 4	B	76	81	anti-parallel
Strand 5	B	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	557	568	anti-parallel
Strand 3	C	571	581	anti-parallel
Strand 4	C	589	596	anti-parallel
Strand 5	C	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	225	first strand
Strand 2	C	228	237	anti-parallel
Strand 3	C	244	257	anti-parallel
Strand 4	C	263	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	287	first strand
Strand 2	C	290	297	anti-parallel
Strand 3	C	314	320	anti-parallel
Strand 4	C	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	425	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	425	430	parallel
Strand 3	C	407	417	anti-parallel
Strand 4	C	361	371	anti-parallel
Strand 5	C	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	450	455	anti-parallel
Strand 3	C	465	471	anti-parallel
Strand 4	C	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	515	first strand
Strand 2	C	520	526	anti-parallel
Strand 3	C	535	540	anti-parallel
Strand 4	C	545	550	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	57	62	parallel
Strand 3	D	108	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	159	164	parallel
Strand 3	D	130	135	anti-parallel
Strand 4	D	76	81	anti-parallel
Strand 5	D	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	179	first strand
Strand 2	E	557	568	anti-parallel
Strand 3	E	571	581	anti-parallel
Strand 4	E	589	596	anti-parallel
Strand 5	E	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	225	first strand
Strand 2	E	228	237	anti-parallel
Strand 3	E	244	257	anti-parallel
Strand 4	E	263	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	287	first strand
Strand 2	E	290	297	anti-parallel
Strand 3	E	314	320	anti-parallel
Strand 4	E	332	334	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	425	430	parallel
Strand 3	E	407	417	anti-parallel
Strand 4	E	361	371	anti-parallel
Strand 5	E	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	425	430	parallel
Strand 3	E	407	417	anti-parallel
Strand 4	E	361	371	anti-parallel
Strand 5	E	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	442	447	first strand
Strand 2	E	450	455	anti-parallel
Strand 3	E	465	471	anti-parallel
Strand 4	E	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	515	first strand
Strand 2	E	520	526	anti-parallel
Strand 3	E	535	540	anti-parallel
Strand 4	E	545	550	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	57	62	parallel
Strand 3	F	108	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	159	164	parallel
Strand 3	F	130	136	anti-parallel
Strand 4	F	76	81	anti-parallel
Strand 5	F	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	179	first strand
Strand 2	G	557	568	anti-parallel
Strand 3	G	571	581	anti-parallel
Strand 4	G	589	596	anti-parallel
Strand 5	G	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	225	first strand
Strand 2	G	228	237	anti-parallel
Strand 3	G	244	257	anti-parallel
Strand 4	G	263	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	279	287	first strand
Strand 2	G	290	297	anti-parallel
Strand 3	G	314	320	anti-parallel
Strand 4	G	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	337	341	first strand
Strand 2	G	424	430	parallel
Strand 3	G	407	417	anti-parallel
Strand 4	G	361	371	anti-parallel
Strand 5	G	347	350	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	337	341	first strand
Strand 2	G	424	430	parallel
Strand 3	G	407	417	anti-parallel
Strand 4	G	361	371	anti-parallel
Strand 5	G	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	442	447	first strand
Strand 2	G	450	455	anti-parallel
Strand 3	G	465	471	anti-parallel
Strand 4	G	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	511	515	first strand
Strand 2	G	520	526	anti-parallel
Strand 3	G	535	540	anti-parallel
Strand 4	G	545	550	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	57	62	parallel
Strand 3	H	108	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	50	first strand
Strand 2	H	159	164	parallel
Strand 3	H	130	135	anti-parallel
Strand 4	H	76	81	anti-parallel
Strand 5	H	99	101	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PDL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDL