Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDM entry

There is 1 chain in PDB entry 6PDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 150GLN 845
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6PDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 159Right-handed alpha
Helix 2
AA2
A
159 176Right-handed alpha
Helix 3
AA3
A
189 199Right-handed alpha
Helix 4
AA4
A
209 223Right-handed alpha
Helix 5
AA5
A
235 239Right-handed 310
Helix 6
AA6
A
261 264Right-handed 310
Helix 7
AA7
A
265 277Right-handed alpha
Helix 8
AA8
A
310 318Right-handed alpha
Helix 9
AA9
A
356 360Right-handed 310
Helix 10
AB1
A
380 387Right-handed alpha
Helix 11
AB2
A
521 530Right-handed alpha
Helix 12
AB3
A
530 549Right-handed alpha
Helix 13
AB4
A
550 553Right-handed 310
Helix 14
AB5
A
593 600Right-handed alpha
Helix 15
AB6
A
612 626Right-handed alpha
Helix 16
AB7
A
673 683Right-handed alpha
Helix 17
AB8
A
705 713Right-handed alpha
Helix 18
AB9
A
725 730Right-handed alpha
Helix 19
AC1
A
741 745Right-handed 310
Helix 20
AC2
A
763 767Right-handed 310
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There are 12 sheets in PDB entry 6PDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
202 206parallel
Strand 3
A
180 184parallel
Strand 4
A
251 254parallel
Strand 5
A
295 297parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
434 438anti-parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
300 309anti-parallel
Strand 5
A
371 377anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
300 309anti-parallel
Strand 3
A
407 417anti-parallel
Strand 4
A
420 423anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
327 328anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
516 519parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
465 470anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
446 447anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 635first strand
Strand 2
A
604 608parallel
Strand 3
A
582 587parallel
Strand 4
A
656 661parallel
Strand 5
A
685 692parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 740first strand
Strand 2
A
811 822anti-parallel
Strand 3
A
781 793anti-parallel
Strand 4
A
695 700anti-parallel
Strand 5
A
754 760anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 740first strand
Strand 2
A
811 822anti-parallel
Strand 3
A
781 793anti-parallel
Strand 4
A
799 801anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 704first strand
Strand 2
A
748 749anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 776first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
838 843anti-parallel
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