Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDQ entry

There are 6 chains in PDB entry 6PDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34VAL 172
B
 HIS 198PRO 290
D
 LEU 33VAL 174
E
 HIS 198PRO 290
F
 ASP 2ASP 5
G
 ASP 2ASP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6PDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
66 81Right-handed alpha
Helix 3
AA3
A
92 105Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
142 144Right-handed 310
Helix 6
AA6
A
148 152Right-handed 310
Helix 7
AA7
B
227 240Right-handed alpha
Helix 8
AA8
B
244 258Right-handed alpha
Helix 9
AA9
D
56 60Right-handed 310
Helix 10
AB1
D
66 81Right-handed alpha
Helix 11
AB2
D
92 105Right-handed alpha
Helix 12
AB3
D
136 141Right-handed alpha
Helix 13
AB4
D
142 144Right-handed 310
Helix 14
AB5
D
148 152Right-handed 310
Helix 15
AB6
E
227 240Right-handed alpha
Helix 16
AB7
E
244 258Right-handed alpha
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There are 7 sheets in PDB entry 6PDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
B
206 210parallel
Strand 6
B
277 280anti-parallel
Strand 7
E
277 280anti-parallel
Strand 8
E
206 210anti-parallel
Strand 9
D
156 161parallel
Strand 10
D
114 119parallel
Strand 11
D
46 51parallel
Strand 12
D
84 89parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 128anti-parallel
Strand 3
A
133 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 172first strand
Strand 2
E
199 200anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
D
172 174anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
219 221anti-parallel
Strand 3
G
3 4anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 123first strand
Strand 2
D
126 128anti-parallel
Strand 3
D
133 135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
225 226first strand
Strand 2
E
219 221anti-parallel
Strand 3
F
3 4anti-parallel
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