Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDW entry

There are 6 chains in PDB entry 6PDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 44ILE 361
C
 GLU 44ARG 362
D
 ASP 42ILE 361
E
 GLU 44ILE 361
F
 ASP 86ARG 362
G
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 6PDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
44 65Right-handed alpha
Helix 2
AA2
B
92 97Right-handed alpha
Helix 3
AA3
B
98 100Right-handed 310
Helix 4
AA4
B
102 106Right-handed 310
Helix 5
AA5
B
117 128Right-handed alpha
Helix 6
AA6
B
133 138Right-handed 310
Helix 7
AA7
B
159 171Right-handed alpha
Helix 8
AA8
B
179 184Right-handed alpha
Helix 9
AA9
B
189 205Right-handed alpha
Helix 10
AB1
B
227 242Right-handed alpha
Helix 11
AB2
B
270 276Right-handed alpha
Helix 12
AB3
B
288 298Right-handed alpha
Helix 13
AB4
B
308 316Right-handed alpha
Helix 14
AB5
B
320 341Right-handed alpha
Helix 15
AB6
C
45 64Right-handed alpha
Helix 16
AB7
C
90 98Right-handed alpha
Helix 17
AB8
C
109 113Right-handed 310
Helix 18
AB9
C
117 127Right-handed alpha
Helix 19
AC1
C
127 132Right-handed alpha
Helix 20
AC2
C
135 139Right-handed 310
Helix 21
AC3
C
140 145Right-handed 310
Helix 22
AC4
C
159 170Right-handed alpha
Helix 23
AC5
C
179 184Right-handed alpha
Helix 24
AC6
C
190 205Right-handed alpha
Helix 25
AC7
C
214 219Right-handed alpha
Helix 26
AC8
C
227 243Right-handed alpha
Helix 27
AC9
C
244 247Right-handed 310
Helix 28
AD1
C
264 268Right-handed 310
Helix 29
AD2
C
269 274Right-handed alpha
Helix 30
AD3
C
286 298Right-handed alpha
Helix 31
AD4
C
308 316Right-handed alpha
Helix 32
AD5
C
320 344Right-handed alpha
Helix 33
AD6
D
43 64Right-handed alpha
Helix 34
AD7
D
92 100Right-handed alpha
Helix 35
AD8
D
117 127Right-handed alpha
Helix 36
AD9
D
127 132Right-handed alpha
Helix 37
AE1
D
133 138Right-handed 310
Helix 38
AE2
D
141 145Right-handed 310
Helix 39
AE3
D
159 172Right-handed alpha
Helix 40
AE4
D
179 184Right-handed alpha
Helix 41
AE5
D
189 205Right-handed alpha
Helix 42
AE6
D
215 218Right-handed 310
Helix 43
AE7
D
227 242Right-handed alpha
Helix 44
AE8
D
264 268Right-handed 310
Helix 45
AE9
D
269 274Right-handed alpha
Helix 46
AF1
D
286 298Right-handed alpha
Helix 47
AF2
D
308 316Right-handed alpha
Helix 48
AF3
D
320 344Right-handed alpha
Helix 49
AF4
E
45 64Right-handed alpha
Helix 50
AF5
E
90 97Right-handed alpha
Helix 51
AF6
E
102 106Right-handed 310
Helix 52
AF7
E
117 127Right-handed alpha
Helix 53
AF8
E
133 137Right-handed 310
Helix 54
AF9
E
140 145Right-handed 310
Helix 55
AG1
E
160 170Right-handed alpha
Helix 56
AG2
E
179 184Right-handed alpha
Helix 57
AG3
E
190 205Right-handed alpha
Helix 58
AG4
E
214 219Right-handed alpha
Helix 59
AG5
E
231 242Right-handed alpha
Helix 60
AG6
E
286 298Right-handed alpha
Helix 61
AG7
E
309 316Right-handed alpha
Helix 62
AG8
E
320 342Right-handed alpha
Helix 63
AG9
F
90 98Right-handed alpha
Helix 64
AH1
F
117 132Right-handed alpha
Helix 65
AH2
F
133 138Right-handed 310
Helix 66
AH3
F
162 171Right-handed alpha
Helix 67
AH4
F
190 205Right-handed alpha
Helix 68
AH5
F
229 243Right-handed alpha
Helix 69
AH6
F
269 274Right-handed alpha
Helix 70
AH7
F
289 298Right-handed alpha
Helix 71
AH8
F
308 314Right-handed alpha
Helix 72
AH9
F
315 317Right-handed 310
Helix 73
AI1
F
320 332Right-handed alpha
Helix 74
AI2
F
333 346Right-handed alpha
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There are 6 sheets in PDB entry 6PDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
278 281parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
209 212parallel
Strand 3
B
259 260parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 178first strand
Strand 2
C
208 213parallel
Strand 3
C
256 262parallel
Strand 4
C
149 153parallel
Strand 5
C
278 281parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 178first strand
Strand 2
D
208 213parallel
Strand 3
D
256 262parallel
Strand 4
D
149 153parallel
Strand 5
D
278 281parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
175 178first strand
Strand 2
E
208 213parallel
Strand 3
E
256 262parallel
Strand 4
E
149 153parallel
Strand 5
E
278 281parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
175 178first strand
Strand 2
F
208 212parallel
Strand 3
F
256 261parallel
Strand 4
F
150 152parallel
Strand 5
F
278 280parallel
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