Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDX entry

There are 4 chains in PDB entry 6PDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 8GLN 501
H
GLN 1PRO 229
L
SER 2SER 215
B
ASN 6ASP 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6PDX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
65 72Right-handed alpha
Helix 2
AA2
A
73 80Right-handed 310
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
187 195Right-handed alpha
Helix 5
AA5
A
366 385Right-handed alpha
Helix 6
AA6
A
404 456Right-handed alpha
Helix 7
AA7
A
474 484Right-handed alpha
Helix 8
AA8
A
487 500Right-handed alpha
Helix 9
AA9
H
28 32Right-handed 310
Helix 10
AB1
H
61 64Right-handed 310
Helix 11
AB2
H
86 90Right-handed 310
Helix 12
AB3
H
201 205Right-handed 310
Helix 13
AB4
H
217 220Right-handed 310
Helix 14
AB5
L
80 84Right-handed 310
Helix 15
AB6
L
124 130Right-handed alpha
Helix 16
AB7
L
184 190Right-handed alpha
Helix 17
AB8
B
65 72Right-handed alpha
Helix 18
AB9
B
73 80Right-handed 310
Helix 19
AC1
B
104 116Right-handed alpha
Helix 20
AC2
B
187 195Right-handed alpha
Helix 21
AC3
B
366 385Right-handed alpha
Helix 22
AC4
B
404 456Right-handed alpha
Helix 23
AC5
B
474 483Right-handed alpha
Helix 24
AC6
B
487 500Right-handed alpha
Helix 25
AC7
M
28 32Right-handed 310
Helix 26
AC8
M
86 90Right-handed 310
Helix 27
AC9
M
201 205Right-handed 310
Helix 28
AD1
M
217 220Right-handed 310
Helix 29
AD2
N
80 84Right-handed 310
Helix 30
AD3
N
124 130Right-handed alpha
Helix 31
AD4
N
184 190Right-handed alpha
Helix 32
AD5
C
65 72Right-handed alpha
Helix 33
AD6
C
73 78Right-handed 310
Helix 34
AD7
C
104 116Right-handed alpha
Helix 35
AD8
C
187 195Right-handed alpha
Helix 36
AD9
C
367 385Right-handed alpha
Helix 37
AE1
C
404 456Right-handed alpha
Helix 38
AE2
C
474 483Right-handed alpha
Helix 39
AE3
C
487 500Right-handed alpha
Helix 40
AE4
O
28 32Right-handed 310
Helix 41
AE5
O
86 90Right-handed 310
Helix 42
AE6
O
201 205Right-handed 310
Helix 43
AE7
O
217 220Right-handed 310
Helix 44
AE8
P
80 84Right-handed 310
Helix 45
AE9
P
124 129Right-handed alpha
Helix 46
AF1
P
184 190Right-handed alpha
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There are 66 sheets in PDB entry 6PDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
360 365first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
466 469anti-parallel
Strand 5
A
459 461anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 26first strand
Strand 2
A
34 36anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 41first strand
Strand 2
A
315 317anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 44first strand
Strand 2
A
294 295parallel
Strand 3
A
307 308parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 52first strand
Strand 2
A
274 275parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 60first strand
Strand 2
A
86 88parallel
Strand 3
A
266 267parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 122first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
229 237anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 122first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 252anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 140first strand
Strand 2
A
145 146anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
286 288first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
302 305anti-parallel
Strand 4
A
389 391anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
91 98anti-parallel
Strand 5
H
116 119anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
57 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
91 98anti-parallel
Strand 5
H
123 125anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
152 161first strand
Strand 2
H
192 200anti-parallel
Strand 3
H
179 182anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
167 170first strand
Strand 2
H
210 216anti-parallel
Strand 3
H
221 227anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
104 109parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
104 109parallel
Strand 3
L
85 91anti-parallel
Strand 4
L
99 100anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
163 164anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
168 169anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
147 153first strand
Strand 2
L
194 200anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
360 365first strand
Strand 2
B
351 357anti-parallel
Strand 3
B
11 17anti-parallel
Strand 4
B
466 469anti-parallel
Strand 5
B
459 461anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 26first strand
Strand 2
B
34 36anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 41first strand
Strand 2
B
315 317anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
43 44first strand
Strand 2
B
294 295parallel
Strand 3
B
307 308parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
51 52first strand
Strand 2
B
274 275parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 60first strand
Strand 2
B
86 89parallel
Strand 3
B
266 269parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 122first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
175 184anti-parallel
Strand 4
B
229 237anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 122first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
175 184anti-parallel
Strand 4
B
251 252anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
136 140first strand
Strand 2
B
145 146anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
165 169first strand
Strand 2
B
242 247anti-parallel
Strand 3
B
202 205anti-parallel
Strand 4
B
210 213anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
287 288first strand
Strand 2
B
281 282anti-parallel
Strand 3
B
302 305anti-parallel
Strand 4
B
389 391anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
4 7first strand
Strand 2
M
18 24anti-parallel
Strand 3
M
77 82anti-parallel
Strand 4
M
67 72anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
57 59first strand
Strand 2
M
45 51anti-parallel
Strand 3
M
34 39anti-parallel
Strand 4
M
91 98anti-parallel
Strand 5
M
116 119anti-parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
57 59first strand
Strand 2
M
45 51anti-parallel
Strand 3
M
34 39anti-parallel
Strand 4
M
91 98anti-parallel
Strand 5
M
123 125anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
136 137first strand
Strand 2
M
152 161anti-parallel
Strand 3
M
192 200anti-parallel
Strand 4
M
179 186anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
167 170first strand
Strand 2
M
212 216anti-parallel
Strand 3
M
221 224anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
4 5first strand
Strand 2
N
18 24anti-parallel
Strand 3
N
71 76anti-parallel
Strand 4
N
63 68anti-parallel
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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
9 13first strand
Strand 2
N
104 109parallel
Strand 3
N
85 91anti-parallel
Strand 4
N
35 39anti-parallel
Strand 5
N
46 49anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
9 13first strand
Strand 2
N
104 109parallel
Strand 3
N
85 91anti-parallel
Strand 4
N
99 100anti-parallel
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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
117 121first strand
Strand 2
N
133 140anti-parallel
Strand 3
N
173 183anti-parallel
Strand 4
N
168 170anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
147 153first strand
Strand 2
N
194 200anti-parallel
Strand 3
N
207 209anti-parallel
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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
360 366first strand
Strand 2
C
351 357anti-parallel
Strand 3
C
11 17anti-parallel
Strand 4
C
466 469anti-parallel
Strand 5
C
459 461anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
24 26first strand
Strand 2
C
34 36anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 41first strand
Strand 2
C
315 317anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 44first strand
Strand 2
C
294 295parallel
Strand 3
C
307 308parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
51 52first strand
Strand 2
C
274 275parallel
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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
58 61first strand
Strand 2
C
86 89parallel
Strand 3
C
266 269parallel
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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
120 122first strand
Strand 2
C
256 259anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
229 237anti-parallel
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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
120 122first strand
Strand 2
C
256 259anti-parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
251 252anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
130 131first strand
Strand 2
C
155 156anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
136 140first strand
Strand 2
C
145 146anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 247anti-parallel
Strand 3
C
202 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
3 7first strand
Strand 2
O
18 25anti-parallel
Strand 3
O
77 82anti-parallel
Strand 4
O
67 72anti-parallel
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There are 6 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
11 12first strand
Strand 2
O
123 127parallel
Strand 3
O
91 98anti-parallel
Strand 4
O
34 39anti-parallel
Strand 5
O
45 51anti-parallel
Strand 6
O
57 59anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
11 12first strand
Strand 2
O
123 127parallel
Strand 3
O
91 98anti-parallel
Strand 4
O
116 119anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
136 137first strand
Strand 2
O
158 161anti-parallel
Strand 3
O
192 194anti-parallel
Strand 4
O
185 186anti-parallel
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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
152 155first strand
Strand 2
O
196 200anti-parallel
Strand 3
O
179 181anti-parallel
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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
167 170first strand
Strand 2
O
210 216anti-parallel
Strand 3
O
221 227anti-parallel
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There are 5 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
9 13first strand
Strand 2
P
105 109parallel
Strand 3
P
85 91anti-parallel
Strand 4
P
35 39anti-parallel
Strand 5
P
46 49anti-parallel
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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
9 13first strand
Strand 2
P
105 109parallel
Strand 3
P
85 91anti-parallel
Strand 4
P
99 100anti-parallel
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There are 3 strands in AG9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
18 23first strand
Strand 2
P
71 76anti-parallel
Strand 3
P
63 68anti-parallel
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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
117 121first strand
Strand 2
P
133 142anti-parallel
Strand 3
P
175 183anti-parallel
Strand 4
P
162 164anti-parallel
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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
117 121first strand
Strand 2
P
133 142anti-parallel
Strand 3
P
175 183anti-parallel
Strand 4
P
168 169anti-parallel
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There are 3 strands in AH3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
147 153first strand
Strand 2
P
194 200anti-parallel
Strand 3
P
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il