Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDY entry

There are 7 chains in PDB entry 6PDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ASN 90GLN 342
A
 ARG 48PRO 355
B
 GLU 44ALA 345
C
 GLU 44ILE 361
D
 ASP 42ASP 356
E
 GLU 44GLN 342
G
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 6PDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
90 96Right-handed alpha
Helix 2
AA2
F
97 99Right-handed 310
Helix 3
AA3
F
109 113Right-handed 310
Helix 4
AA4
F
117 127Right-handed alpha
Helix 5
AA5
F
127 132Right-handed alpha
Helix 6
AA6
F
133 137Right-handed 310
Helix 7
AA7
F
158 171Right-handed alpha
Helix 8
AA8
F
179 184Right-handed 310
Helix 9
AA9
F
189 205Right-handed alpha
Helix 10
AB1
F
231 240Right-handed alpha
Helix 11
AB2
F
269 275Right-handed alpha
Helix 12
AB3
F
288 299Right-handed alpha
Helix 13
AB4
F
311 316Right-handed alpha
Helix 14
AB5
F
321 327Right-handed alpha
Helix 15
AB6
F
336 342Right-handed alpha
Helix 16
AB7
A
49 64Right-handed alpha
Helix 17
AB8
A
90 95Right-handed alpha
Helix 18
AB9
A
96 100Right-handed 310
Helix 19
AC1
A
109 113Right-handed 310
Helix 20
AC2
A
118 127Right-handed alpha
Helix 21
AC3
A
127 132Right-handed alpha
Helix 22
AC4
A
159 170Right-handed alpha
Helix 23
AC5
A
192 205Right-handed alpha
Helix 24
AC6
A
229 240Right-handed alpha
Helix 25
AC7
A
269 274Right-handed alpha
Helix 26
AC8
A
286 298Right-handed alpha
Helix 27
AC9
A
310 314Right-handed 310
Helix 28
AD1
A
320 344Right-handed alpha
Helix 29
AD2
B
45 65Right-handed alpha
Helix 30
AD3
B
93 98Right-handed alpha
Helix 31
AD4
B
117 127Right-handed alpha
Helix 32
AD5
B
127 132Right-handed alpha
Helix 33
AD6
B
133 138Right-handed 310
Helix 34
AD7
B
160 171Right-handed alpha
Helix 35
AD8
B
191 205Right-handed alpha
Helix 36
AD9
B
227 242Right-handed alpha
Helix 37
AE1
B
269 274Right-handed alpha
Helix 38
AE2
B
286 298Right-handed alpha
Helix 39
AE3
B
308 316Right-handed alpha
Helix 40
AE4
B
322 339Right-handed alpha
Helix 41
AE5
B
340 345Right-handed alpha
Helix 42
AE6
C
45 64Right-handed alpha
Helix 43
AE7
C
90 95Right-handed alpha
Helix 44
AE8
C
96 100Right-handed 310
Helix 45
AE9
C
102 106Right-handed 310
Helix 46
AF1
C
117 125Right-handed alpha
Helix 47
AF2
C
127 132Right-handed alpha
Helix 48
AF3
C
133 138Right-handed 310
Helix 49
AF4
C
159 170Right-handed alpha
Helix 50
AF5
C
179 184Right-handed alpha
Helix 51
AF6
C
192 205Right-handed alpha
Helix 52
AF7
C
229 242Right-handed alpha
Helix 53
AF8
C
264 268Right-handed 310
Helix 54
AF9
C
269 274Right-handed alpha
Helix 55
AG1
C
286 298Right-handed alpha
Helix 56
AG2
C
308 316Right-handed alpha
Helix 57
AG3
C
322 331Right-handed alpha
Helix 58
AG4
C
333 344Right-handed alpha
Helix 59
AG5
D
43 64Right-handed alpha
Helix 60
AG6
D
90 98Right-handed alpha
Helix 61
AG7
D
109 113Right-handed 310
Helix 62
AG8
D
121 126Right-handed alpha
Helix 63
AG9
D
161 168Right-handed alpha
Helix 64
AH1
D
179 183Right-handed 310
Helix 65
AH2
D
189 205Right-handed alpha
Helix 66
AH3
D
214 219Right-handed alpha
Helix 67
AH4
D
227 231Right-handed 310
Helix 68
AH5
D
236 241Right-handed alpha
Helix 69
AH6
D
271 276Right-handed alpha
Helix 70
AH7
D
288 298Right-handed alpha
Helix 71
AH8
D
308 317Right-handed alpha
Helix 72
AH9
D
322 342Right-handed alpha
Helix 73
AI1
E
45 64Right-handed alpha
Helix 74
AI2
E
92 98Right-handed alpha
Helix 75
AI3
E
109 113Right-handed 310
Helix 76
AI4
E
116 126Right-handed alpha
Helix 77
AI5
E
135 140Right-handed 310
Helix 78
AI6
E
161 170Right-handed alpha
Helix 79
AI7
E
179 183Right-handed 310
Helix 80
AI8
E
191 205Right-handed alpha
Helix 81
AI9
E
214 219Right-handed alpha
Helix 82
AJ1
E
227 242Right-handed alpha
Helix 83
AJ2
E
243 247Right-handed 310
Helix 84
AJ3
E
286 298Right-handed alpha
Helix 85
AJ4
E
308 316Right-handed alpha
Helix 86
AJ5
E
320 331Right-handed alpha
Helix 87
AJ6
E
333 340Right-handed alpha
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There are 8 sheets in PDB entry 6PDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
176 177first strand
Strand 2
F
210 213parallel
Strand 3
F
258 262parallel
Strand 4
F
149 153parallel
Strand 5
F
278 281parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
259 261parallel
Strand 3
A
212 213parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
208 209parallel
Strand 3
A
256 257parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
210 211parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
150 153parallel
Strand 3
C
278 281parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
209 211parallel
Strand 3
C
257 258parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 177first strand
Strand 2
D
208 213parallel
Strand 3
D
256 262parallel
Strand 4
D
149 153parallel
Strand 5
D
278 281parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 177first strand
Strand 2
E
209 213parallel
Strand 3
E
257 261parallel
Strand 4
E
149 153parallel
Strand 5
E
278 281parallel
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