Analysis of interatomic Contacts of Structural Units in PDB entry:
6PDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PDZ entry

There are 4 chains in PDB entry 6PDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 203TYR 477
C
 ASN 2338MET 2350
A
 GLU 207TYR 477
D
 MET 2339MET 2350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6PDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
205 226Right-handed alpha
Helix 2
AA2
B
229 238Right-handed alpha
Helix 3
AA3
B
251 259Right-handed alpha
Helix 4
AA4
B
276 288Right-handed alpha
Helix 5
AA5
B
289 302Right-handed alpha
Helix 6
AA6
B
305 309Right-handed 310
Helix 7
AA7
B
310 333Right-handed alpha
Helix 8
AA8
B
350 356Right-handed alpha
Helix 9
AA9
B
359 363Right-handed 310
Helix 10
AB1
B
364 377Right-handed alpha
Helix 11
AB2
B
380 393Right-handed alpha
Helix 12
AB3
B
402 425Right-handed alpha
Helix 13
AB4
B
430 458Right-handed alpha
Helix 14
AB5
B
466 475Right-handed alpha
Helix 15
AB6
C
2339 2350Right-handed alpha
Helix 16
AB7
A
208 226Right-handed alpha
Helix 17
AB8
A
229 238Right-handed alpha
Helix 18
AB9
A
251 258Right-handed alpha
Helix 19
AC1
A
258 263Right-handed alpha
Helix 20
AC2
A
282 289Right-handed alpha
Helix 21
AC3
A
289 302Right-handed alpha
Helix 22
AC4
A
310 333Right-handed alpha
Helix 23
AC5
A
342 344Right-handed 310
Helix 24
AC6
A
350 356Right-handed alpha
Helix 25
AC7
A
359 363Right-handed 310
Helix 26
AC8
A
364 377Right-handed alpha
Helix 27
AC9
A
380 393Right-handed alpha
Helix 28
AD1
A
402 425Right-handed alpha
Helix 29
AD2
A
430 458Right-handed alpha
Helix 30
AD3
A
466 474Right-handed alpha
Helix 31
AD4
D
2340 2350Right-handed alpha
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There are 2 sheets in PDB entry 6PDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
Strand 4
B
334 335anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
Strand 4
A
334 335anti-parallel
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