Analysis of interatomic Contacts of Structural Units in PDB entry:
6PE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PE2 entry

There are 10 chains in PDB entry 6PE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	ARG 569
B	THR 617	LYS 734
C	C 1	A 9
D	A 1	C 27
E	G 13	G 74
G	THR 115	ARG 570
H	THR 617	LYS 734
I	C 1	A 9
J	A 1	A 20
K	T -37	G 17

There are 51 helices in PDB entry 6PE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	129	Right-handed alpha
Helix 2	AA2	A	129	140	Right-handed alpha
Helix 3	AA3	A	141	149	Right-handed alpha
Helix 4	AA4	A	158	170	Right-handed alpha
Helix 5	AA5	A	172	183	Right-handed alpha
Helix 6	AA6	A	188	197	Right-handed alpha
Helix 7	AA7	A	206	213	Right-handed alpha
Helix 8	AA8	A	279	294	Right-handed alpha
Helix 9	AA9	A	305	315	Right-handed alpha
Helix 10	AB1	A	339	354	Right-handed alpha
Helix 11	AB2	A	365	376	Right-handed alpha
Helix 12	AB3	A	387	392	Right-handed alpha
Helix 13	AB4	A	400	408	Right-handed alpha
Helix 14	AB5	A	409	422	Right-handed alpha
Helix 15	AB6	A	428	447	Right-handed alpha
Helix 16	AB7	A	465	480	Right-handed alpha
Helix 17	AB8	A	491	515	Right-handed alpha
Helix 18	AB9	A	521	526	Right-handed 310
Helix 19	AC1	A	527	540	Right-handed alpha
Helix 20	AC2	A	548	563	Right-handed alpha
Helix 21	AC3	A	564	568	Right-handed 310
Helix 22	AC4	B	620	639	Right-handed alpha
Helix 23	AC5	B	652	657	Right-handed alpha
Helix 24	AC6	B	667	682	Right-handed alpha
Helix 25	AC7	B	693	702	Right-handed alpha
Helix 26	AC8	B	708	734	Right-handed alpha
Helix 27	AC9	G	116	141	Right-handed alpha
Helix 28	AD1	G	142	150	Right-handed alpha
Helix 29	AD2	G	159	171	Right-handed alpha
Helix 30	AD3	G	173	184	Right-handed alpha
Helix 31	AD4	G	189	198	Right-handed alpha
Helix 32	AD5	G	207	214	Right-handed alpha
Helix 33	AD6	G	280	295	Right-handed alpha
Helix 34	AD7	G	306	316	Right-handed alpha
Helix 35	AD8	G	340	355	Right-handed alpha
Helix 36	AD9	G	366	377	Right-handed alpha
Helix 37	AE1	G	388	393	Right-handed alpha
Helix 38	AE2	G	401	409	Right-handed alpha
Helix 39	AE3	G	410	423	Right-handed alpha
Helix 40	AE4	G	429	448	Right-handed alpha
Helix 41	AE5	G	466	481	Right-handed alpha
Helix 42	AE6	G	492	516	Right-handed alpha
Helix 43	AE7	G	522	526	Right-handed 310
Helix 44	AE8	G	528	541	Right-handed alpha
Helix 45	AE9	G	549	564	Right-handed alpha
Helix 46	AF1	G	565	570	Right-handed 310
Helix 47	AF2	H	620	639	Right-handed alpha
Helix 48	AF3	H	652	657	Right-handed alpha
Helix 49	AF4	H	667	682	Right-handed alpha
Helix 50	AF5	H	693	702	Right-handed alpha
Helix 51	AF6	H	708	734	Right-handed alpha

There are 6 sheets in PDB entry 6PE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	267	274	anti-parallel
Strand 3	A	253	261	anti-parallel
Strand 4	A	224	233	anti-parallel
Strand 5	A	296	302	parallel
Strand 6	A	333	338	parallel
Strand 7	A	323	325	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	246	248	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	361	363	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	205	206	first strand
Strand 2	G	268	275	anti-parallel
Strand 3	G	254	262	anti-parallel
Strand 4	G	225	234	anti-parallel
Strand 5	G	297	303	parallel
Strand 6	G	334	339	parallel
Strand 7	G	324	326	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	242	first strand
Strand 2	G	247	249	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	359	first strand
Strand 2	G	362	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PE2