Analysis of interatomic Contacts of Structural Units in PDB entry:
6PE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PE5 entry

There are 17 chains in PDB entry 6PE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	SER 835
B	GLY 210	LYS 262
D	MET 1	TYR 345
E	SER 2	GLU 70
F	PRO 3	ALA 76
G	PHE 15	GLN 213
H	SER 7	GLU 164
I	MET 1	VAL 159
J	MET 1	VAL 159
K	MET 1	VAL 159
L	MET 1	VAL 159
M	MET 1	VAL 159
N	MET 1	VAL 159
O	MET 1	VAL 159
P	MET 1	VAL 159
Q	ALA 50	ILE 492
R	ALA 50	ILE 492

There are146 helices in PDB entry 6PE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	56	78	Right-handed alpha
Helix 3	AA3	A	104	128	Right-handed alpha
Helix 4	AA4	A	131	146	Right-handed alpha
Helix 5	AA5	A	195	207	Right-handed alpha
Helix 6	AA6	A	243	256	Right-handed alpha
Helix 7	AA7	A	266	278	Right-handed alpha
Helix 8	AA8	A	280	289	Right-handed alpha
Helix 9	AA9	A	293	304	Right-handed alpha
Helix 10	AB1	A	306	324	Right-handed alpha
Helix 11	AB2	A	345	360	Right-handed alpha
Helix 12	AB3	A	387	396	Right-handed alpha
Helix 13	AB4	A	407	423	Right-handed alpha
Helix 14	AB5	A	425	441	Right-handed alpha
Helix 15	AB6	A	442	447	Right-handed alpha
Helix 16	AB7	A	454	460	Right-handed alpha
Helix 17	AB8	A	461	479	Right-handed alpha
Helix 18	AB9	A	519	523	Right-handed 310
Helix 19	AC1	A	527	552	Right-handed alpha
Helix 20	AC2	A	552	560	Right-handed alpha
Helix 21	AC3	A	564	596	Right-handed alpha
Helix 22	AC4	A	597	602	Right-handed alpha
Helix 23	AC5	A	607	618	Right-handed alpha
Helix 24	AC6	A	629	648	Right-handed alpha
Helix 25	AC7	A	650	658	Right-handed alpha
Helix 26	AC8	A	709	723	Right-handed alpha
Helix 27	AC9	A	724	732	Right-handed alpha
Helix 28	AD1	A	734	754	Right-handed alpha
Helix 29	AD2	A	756	760	Right-handed 310
Helix 30	AD3	A	763	784	Right-handed alpha
Helix 31	AD4	A	786	803	Right-handed alpha
Helix 32	AD5	A	826	835	Right-handed alpha
Helix 33	AD6	B	220	246	Right-handed alpha
Helix 34	AD7	B	250	254	Right-handed 310
Helix 35	AD8	D	6	22	Right-handed alpha
Helix 36	AD9	D	26	35	Right-handed alpha
Helix 37	AE1	D	38	47	Right-handed alpha
Helix 38	AE2	D	64	86	Right-handed alpha
Helix 39	AE3	D	89	116	Right-handed alpha
Helix 40	AE4	D	119	125	Right-handed alpha
Helix 41	AE5	D	135	141	Right-handed 310
Helix 42	AE6	D	144	150	Right-handed alpha
Helix 43	AE7	D	158	162	Right-handed 310
Helix 44	AE8	D	173	200	Right-handed alpha
Helix 45	AE9	D	201	227	Right-handed alpha
Helix 46	AF1	D	234	239	Right-handed alpha
Helix 47	AF2	D	251	258	Right-handed alpha
Helix 48	AF3	D	261	269	Right-handed alpha
Helix 49	AF4	D	283	299	Right-handed alpha
Helix 50	AF5	D	300	302	Right-handed 310
Helix 51	AF6	D	306	332	Right-handed alpha
Helix 52	AF7	D	334	338	Right-handed 310
Helix 53	AF8	E	4	23	Right-handed alpha
Helix 54	AF9	E	29	53	Right-handed alpha
Helix 55	AG1	F	9	33	Right-handed alpha
Helix 56	AG2	F	48	73	Right-handed alpha
Helix 57	AG3	G	16	40	Right-handed alpha
Helix 58	AG4	G	46	53	Right-handed alpha
Helix 59	AG5	G	55	90	Right-handed alpha
Helix 60	AG6	G	93	97	Right-handed 310
Helix 61	AG7	G	101	122	Right-handed alpha
Helix 62	AG8	G	123	125	Right-handed 310
Helix 63	AG9	G	135	177	Right-handed alpha
Helix 64	AH1	G	180	192	Right-handed alpha
Helix 65	AH2	G	192	206	Right-handed alpha
Helix 66	AH3	H	15	48	Right-handed alpha
Helix 67	AH4	H	52	56	Right-handed 310
Helix 68	AH5	H	60	66	Right-handed alpha
Helix 69	AH6	H	67	82	Right-handed alpha
Helix 70	AH7	H	91	126	Right-handed alpha
Helix 71	AH8	H	133	163	Right-handed alpha
Helix 72	AH9	I	9	43	Right-handed alpha
Helix 73	AI1	I	46	50	Right-handed 310
Helix 74	AI2	I	54	76	Right-handed alpha
Helix 75	AI3	I	83	120	Right-handed alpha
Helix 76	AI4	I	124	152	Right-handed alpha
Helix 77	AI5	J	9	43	Right-handed alpha
Helix 78	AI6	J	46	50	Right-handed 310
Helix 79	AI7	J	54	76	Right-handed alpha
Helix 80	AI8	J	83	120	Right-handed alpha
Helix 81	AI9	J	122	124	Right-handed 310
Helix 82	AJ1	J	125	152	Right-handed alpha
Helix 83	AJ2	K	9	43	Right-handed alpha
Helix 84	AJ3	K	46	50	Right-handed 310
Helix 85	AJ4	K	54	76	Right-handed alpha
Helix 86	AJ5	K	83	120	Right-handed alpha
Helix 87	AJ6	K	122	124	Right-handed 310
Helix 88	AJ7	K	125	152	Right-handed alpha
Helix 89	AJ8	L	9	43	Right-handed alpha
Helix 90	AJ9	L	46	50	Right-handed 310
Helix 91	AK1	L	54	76	Right-handed alpha
Helix 92	AK2	L	83	120	Right-handed alpha
Helix 93	AK3	L	122	124	Right-handed 310
Helix 94	AK4	L	125	152	Right-handed alpha
Helix 95	AK5	M	9	43	Right-handed alpha
Helix 96	AK6	M	46	50	Right-handed 310
Helix 97	AK7	M	54	76	Right-handed alpha
Helix 98	AK8	M	83	120	Right-handed alpha
Helix 99	AK9	M	124	152	Right-handed alpha
Helix 100	AL1	N	9	43	Right-handed alpha
Helix 101	AL2	N	46	50	Right-handed 310
Helix 102	AL3	N	54	76	Right-handed alpha
Helix 103	AL4	N	83	120	Right-handed alpha
Helix 104	AL5	N	124	152	Right-handed alpha
Helix 105	AL6	O	9	43	Right-handed alpha
Helix 106	AL7	O	46	50	Right-handed 310
Helix 107	AL8	O	54	76	Right-handed alpha
Helix 108	AL9	O	83	120	Right-handed alpha
Helix 109	AM1	O	124	152	Right-handed alpha
Helix 110	AM2	P	9	43	Right-handed alpha
Helix 111	AM3	P	46	50	Right-handed 310
Helix 112	AM4	P	54	76	Right-handed alpha
Helix 113	AM5	P	83	120	Right-handed alpha
Helix 114	AM6	P	124	152	Right-handed alpha
Helix 115	AM7	Q	61	65	Right-handed 310
Helix 116	AM8	Q	75	81	Right-handed alpha
Helix 117	AM9	Q	87	93	Right-handed alpha
Helix 118	AN1	Q	112	117	Right-handed alpha
Helix 119	AN2	Q	125	134	Right-handed alpha
Helix 120	AN3	Q	140	147	Right-handed alpha
Helix 121	AN4	Q	186	211	Right-handed alpha
Helix 122	AN5	Q	225	253	Right-handed alpha
Helix 123	AN6	Q	301	310	Right-handed alpha
Helix 124	AN7	Q	337	348	Right-handed alpha
Helix 125	AN8	Q	365	380	Right-handed alpha
Helix 126	AN9	Q	406	419	Right-handed alpha
Helix 127	AO1	Q	425	434	Right-handed alpha
Helix 128	AO2	Q	439	444	Right-handed alpha
Helix 129	AO3	Q	466	476	Right-handed alpha
Helix 130	AO4	Q	480	488	Right-handed alpha
Helix 131	AO5	R	61	65	Right-handed 310
Helix 132	AO6	R	75	81	Right-handed alpha
Helix 133	AO7	R	87	93	Right-handed alpha
Helix 134	AO8	R	112	117	Right-handed alpha
Helix 135	AO9	R	125	134	Right-handed alpha
Helix 136	AP1	R	140	147	Right-handed alpha
Helix 137	AP2	R	186	211	Right-handed alpha
Helix 138	AP3	R	225	253	Right-handed alpha
Helix 139	AP4	R	301	310	Right-handed alpha
Helix 140	AP5	R	337	348	Right-handed alpha
Helix 141	AP6	R	365	380	Right-handed alpha
Helix 142	AP7	R	406	419	Right-handed alpha
Helix 143	AP8	R	425	434	Right-handed alpha
Helix 144	AP9	R	439	444	Right-handed alpha
Helix 145	AQ1	R	466	476	Right-handed alpha
Helix 146	AQ2	R	480	488	Right-handed alpha

There are 8 sheets in PDB entry 6PE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	327	328	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	14	22	anti-parallel
Strand 4	A	368	371	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	217	first strand
Strand 2	A	233	239	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	259	261	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	323	326	first strand
Strand 2	Q	329	332	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	446	448	first strand
Strand 2	Q	459	461	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	323	326	first strand
Strand 2	R	329	332	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	446	448	first strand
Strand 2	R	459	461	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	451	452	first strand
Strand 2	R	455	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PE5