Analysis of interatomic Contacts of Structural Units in PDB entry:
6PEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PEK entry

There are 6 chains in PDB entry 6PEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 323ASP 610
B
 ASN 323ASP 610
C
 ASN 323ASP 610
D
 ARG 318ASP 610
E
 ASN 323ASP 610
G
 GLU 1TYR 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6PEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 332Right-handed alpha
Helix 2
AA2
A
340 344Right-handed 310
Helix 3
AA3
A
347 364Right-handed alpha
Helix 4
AA4
A
387 399Right-handed alpha
Helix 5
AA5
A
418 433Right-handed alpha
Helix 6
AA6
A
455 472Right-handed alpha
Helix 7
AA7
A
493 498Right-handed alpha
Helix 8
AA8
A
510 522Right-handed alpha
Helix 9
AA9
A
530 541Right-handed alpha
Helix 10
AB1
A
545 557Right-handed alpha
Helix 11
AB2
A
558 563Right-handed alpha
Helix 12
AB3
A
565 572Right-handed alpha
Helix 13
AB4
A
581 590Right-handed alpha
Helix 14
AB5
A
597 609Right-handed alpha
Helix 15
AB6
B
324 332Right-handed alpha
Helix 16
AB7
B
347 364Right-handed alpha
Helix 17
AB8
B
387 400Right-handed alpha
Helix 18
AB9
B
417 433Right-handed alpha
Helix 19
AC1
B
455 470Right-handed alpha
Helix 20
AC2
B
493 500Right-handed alpha
Helix 21
AC3
B
510 522Right-handed alpha
Helix 22
AC4
B
530 541Right-handed alpha
Helix 23
AC5
B
545 563Right-handed alpha
Helix 24
AC6
B
565 572Right-handed alpha
Helix 25
AC7
B
581 590Right-handed alpha
Helix 26
AC8
B
597 609Right-handed alpha
Helix 27
AC9
C
324 332Right-handed alpha
Helix 28
AD1
C
347 364Right-handed alpha
Helix 29
AD2
C
387 399Right-handed alpha
Helix 30
AD3
C
407 412Right-handed alpha
Helix 31
AD4
C
417 433Right-handed alpha
Helix 32
AD5
C
455 471Right-handed alpha
Helix 33
AD6
C
488 492Right-handed 310
Helix 34
AD7
C
493 500Right-handed alpha
Helix 35
AD8
C
510 522Right-handed alpha
Helix 36
AD9
C
530 541Right-handed alpha
Helix 37
AE1
C
545 563Right-handed alpha
Helix 38
AE2
C
565 572Right-handed alpha
Helix 39
AE3
C
581 589Right-handed alpha
Helix 40
AE4
C
597 609Right-handed alpha
Helix 41
AE5
D
321 332Right-handed alpha
Helix 42
AE6
D
347 364Right-handed alpha
Helix 43
AE7
D
387 400Right-handed alpha
Helix 44
AE8
D
418 433Right-handed alpha
Helix 45
AE9
D
442 447Right-handed alpha
Helix 46
AF1
D
455 470Right-handed alpha
Helix 47
AF2
D
488 492Right-handed 310
Helix 48
AF3
D
493 500Right-handed alpha
Helix 49
AF4
D
510 522Right-handed alpha
Helix 50
AF5
D
530 541Right-handed alpha
Helix 51
AF6
D
545 564Right-handed alpha
Helix 52
AF7
D
565 572Right-handed alpha
Helix 53
AF8
D
581 589Right-handed alpha
Helix 54
AF9
D
597 610Right-handed alpha
Helix 55
AG1
E
324 333Right-handed alpha
Helix 56
AG2
E
340 344Right-handed 310
Helix 57
AG3
E
347 364Right-handed alpha
Helix 58
AG4
E
387 400Right-handed alpha
Helix 59
AG5
E
417 433Right-handed alpha
Helix 60
AG6
E
442 446Right-handed 310
Helix 61
AG7
E
455 469Right-handed alpha
Helix 62
AG8
E
488 492Right-handed 310
Helix 63
AG9
E
493 500Right-handed alpha
Helix 64
AH1
E
510 522Right-handed alpha
Helix 65
AH2
E
530 540Right-handed alpha
Helix 66
AH3
E
545 554Right-handed alpha
Helix 67
AH4
E
598 610Right-handed alpha
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There are 5 sheets in PDB entry 6PEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
436 440parallel
Strand 3
A
481 485parallel
Strand 4
A
377 381parallel
Strand 5
A
502 505parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 406first strand
Strand 2
B
436 441parallel
Strand 3
B
480 485parallel
Strand 4
B
377 381parallel
Strand 5
B
502 505parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
C
402 406anti-parallel
Strand 3
C
436 441parallel
Strand 4
C
480 486parallel
Strand 5
C
377 381parallel
Strand 6
C
502 505parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
402 406first strand
Strand 2
D
436 441parallel
Strand 3
D
480 485parallel
Strand 4
D
377 381parallel
Strand 5
D
502 505parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
404 405first strand
Strand 2
E
438 439parallel
Strand 3
E
482 486parallel
Strand 4
E
379 381parallel
Strand 5
E
503 505parallel
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