Analysis of interatomic Contacts of Structural Units in PDB entry:
6PER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PER entry

There are 2 chains in PDB entry 6PER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 38LEU 275
A
 VAL 279ILE 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6PER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 66Right-handed alpha
Helix 2
AA2
A
80 89Right-handed alpha
Helix 3
AA3
A
90 93Right-handed 310
Helix 4
AA4
A
102 108Right-handed alpha
Helix 5
AA5
A
123 126Right-handed 310
Helix 6
AA6
A
214 220Right-handed 310
Helix 7
AA7
A
267 272Right-handed 310
Helix 8
AA8
A
279 283Right-handed 310
Helix 9
AA9
A
286 292Right-handed 310
Helix 10
AB1
A
293 298Right-handed alpha
Helix 11
AB2
A
363 380Right-handed alpha
Helix 12
AB3
A
399 404Right-handed alpha
Helix 13
AB4
A
409 416Right-handed alpha
Helix 14
AB5
A
417 420Right-handed 310
Helix 15
AB6
A
426 430Right-handed alpha
Helix 16
AB7
A
434 443Right-handed alpha
Helix 17
AB8
A
455 463Right-handed alpha
Helix 18
AB9
A
476 481Right-handed alpha
Helix 19
AC1
A
504 510Right-handed alpha
Helix 20
AC2
A
511 519Right-handed alpha
Helix 21
AC3
A
525 538Right-handed alpha
Helix 22
AC4
A
542 554Right-handed alpha
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There are 5 sheets in PDB entry 6PER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
69 75parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
498 503anti-parallel
Strand 3
A
381 383anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 122first strand
Strand 2
A
127 137anti-parallel
Strand 3
A
143 154anti-parallel
Strand 4
A
303 311anti-parallel
Strand 5
A
316 326anti-parallel
Strand 6
A
329 339anti-parallel
Strand 7
A
222 233parallel
Strand 8
A
236 247anti-parallel
Strand 9
A
252 259anti-parallel
Strand 10
A
184 194anti-parallel
Strand 11
A
166 175anti-parallel
Strand 12
A
116 122anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 472first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
483 486anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
449 452parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il