Analysis of interatomic Contacts of Structural Units in PDB entry:
6PEU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PEU entry

There are 8 chains in PDB entry 6PEU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 384
B	MET 1	TYR 385
C	ASP 2	TYR 384
D	TYR 5	TYR 384
M	GLY 442	ASP 453
N	GLY 442	ASP 453
P	GLY 442	ASP 453
Q	GLY 442	ASP 453

There are 74 helices in PDB entry 6PEU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	22	Right-handed alpha
Helix 2	AA2	A	22	29	Right-handed alpha
Helix 3	AA3	A	38	41	Right-handed 310
Helix 4	AA4	A	71	89	Right-handed alpha
Helix 5	AA5	A	92	94	Right-handed 310
Helix 6	AA6	A	105	110	Right-handed 310
Helix 7	AA7	A	139	141	Right-handed 310
Helix 8	AA8	A	162	186	Right-handed alpha
Helix 9	AA9	A	195	198	Right-handed 310
Helix 10	AB1	A	200	213	Right-handed alpha
Helix 11	AB2	A	241	245	Right-handed 310
Helix 12	AB3	A	254	276	Right-handed alpha
Helix 13	AB4	A	278	288	Right-handed alpha
Helix 14	AB5	A	289	291	Right-handed 310
Helix 15	AB6	A	292	300	Right-handed alpha
Helix 16	AB7	A	300	305	Right-handed alpha
Helix 17	AB8	A	313	315	Right-handed 310
Helix 18	AB9	A	322	337	Right-handed alpha
Helix 19	AC1	A	375	384	Right-handed alpha
Helix 20	AC2	B	14	22	Right-handed alpha
Helix 21	AC3	B	22	29	Right-handed alpha
Helix 22	AC4	B	38	41	Right-handed 310
Helix 23	AC5	B	71	89	Right-handed alpha
Helix 24	AC6	B	92	94	Right-handed 310
Helix 25	AC7	B	105	110	Right-handed 310
Helix 26	AC8	B	139	141	Right-handed 310
Helix 27	AC9	B	162	186	Right-handed alpha
Helix 28	AD1	B	195	198	Right-handed 310
Helix 29	AD2	B	201	213	Right-handed alpha
Helix 30	AD3	B	241	245	Right-handed 310
Helix 31	AD4	B	254	276	Right-handed alpha
Helix 32	AD5	B	278	288	Right-handed alpha
Helix 33	AD6	B	289	291	Right-handed 310
Helix 34	AD7	B	292	300	Right-handed alpha
Helix 35	AD8	B	300	305	Right-handed alpha
Helix 36	AD9	B	313	315	Right-handed 310
Helix 37	AE1	B	322	337	Right-handed alpha
Helix 38	AE2	B	374	385	Right-handed alpha
Helix 39	AE3	C	14	22	Right-handed alpha
Helix 40	AE4	C	22	29	Right-handed alpha
Helix 41	AE5	C	38	41	Right-handed 310
Helix 42	AE6	C	71	88	Right-handed alpha
Helix 43	AE7	C	92	94	Right-handed 310
Helix 44	AE8	C	105	110	Right-handed 310
Helix 45	AE9	C	139	141	Right-handed 310
Helix 46	AF1	C	162	186	Right-handed alpha
Helix 47	AF2	C	195	198	Right-handed 310
Helix 48	AF3	C	200	213	Right-handed alpha
Helix 49	AF4	C	241	245	Right-handed 310
Helix 50	AF5	C	254	276	Right-handed alpha
Helix 51	AF6	C	278	288	Right-handed alpha
Helix 52	AF7	C	289	291	Right-handed 310
Helix 53	AF8	C	292	300	Right-handed alpha
Helix 54	AF9	C	300	305	Right-handed alpha
Helix 55	AG1	C	313	315	Right-handed 310
Helix 56	AG2	C	322	337	Right-handed alpha
Helix 57	AG3	C	374	384	Right-handed alpha
Helix 58	AG4	D	14	22	Right-handed alpha
Helix 59	AG5	D	22	29	Right-handed alpha
Helix 60	AG6	D	38	41	Right-handed 310
Helix 61	AG7	D	71	89	Right-handed alpha
Helix 62	AG8	D	92	94	Right-handed 310
Helix 63	AG9	D	105	110	Right-handed 310
Helix 64	AH1	D	139	141	Right-handed 310
Helix 65	AH2	D	162	186	Right-handed alpha
Helix 66	AH3	D	201	213	Right-handed alpha
Helix 67	AH4	D	241	245	Right-handed 310
Helix 68	AH5	D	254	276	Right-handed alpha
Helix 69	AH6	D	278	288	Right-handed alpha
Helix 70	AH7	D	292	300	Right-handed alpha
Helix 71	AH8	D	300	305	Right-handed alpha
Helix 72	AH9	D	313	315	Right-handed 310
Helix 73	AI1	D	322	337	Right-handed alpha
Helix 74	AI2	D	374	384	Right-handed alpha

There are 19 sheets in PDB entry 6PEU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	36	first strand
Strand 2	A	47	56	anti-parallel
Strand 3	A	59	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	132	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	343	346	anti-parallel
Strand 4	A	353	358	anti-parallel
Strand 5	A	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	308	311	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	221	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	246	251	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	47	56	anti-parallel
Strand 3	B	59	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	132	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	343	346	anti-parallel
Strand 4	B	353	358	anti-parallel
Strand 5	B	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	308	311	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	221	first strand
Strand 2	B	230	237	anti-parallel
Strand 3	B	246	251	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	36	first strand
Strand 2	C	47	56	anti-parallel
Strand 3	C	59	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	122	127	anti-parallel
Strand 3	C	132	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	122	127	anti-parallel
Strand 3	C	343	346	anti-parallel
Strand 4	C	353	358	anti-parallel
Strand 5	C	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	251	first strand
Strand 2	C	230	237	anti-parallel
Strand 3	C	215	221	anti-parallel
Strand 4	C	191	194	anti-parallel
Strand 5	C	308	311	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	47	53	anti-parallel
Strand 3	D	62	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	122	127	anti-parallel
Strand 3	D	132	137	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	122	127	anti-parallel
Strand 3	D	343	346	anti-parallel
Strand 4	D	353	358	anti-parallel
Strand 5	D	157	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	194	first strand
Strand 2	D	308	311	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	221	first strand
Strand 2	D	230	237	anti-parallel
Strand 3	D	247	251	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PEU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PEU