Analysis of interatomic Contacts of Structural Units in PDB entry:
6PF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PF1 entry

There are 2 chains in PDB entry 6PF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1280GLN 1661
B
 ASN 1280GLN 1661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6PF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1281 1289Right-handed 310
Helix 2
AA2
A
1296 1314Right-handed alpha
Helix 3
AA3
A
1336 1344Right-handed alpha
Helix 4
AA4
A
1406 1408Right-handed 310
Helix 5
AA5
A
1409 1429Right-handed alpha
Helix 6
AA6
A
1459 1477Right-handed alpha
Helix 7
AA7
A
1486 1494Right-handed alpha
Helix 8
AA8
A
1497 1501Right-handed 310
Helix 9
AA9
A
1507 1519Right-handed alpha
Helix 10
AB1
A
1582 1592Right-handed alpha
Helix 11
AB2
A
1602 1608Right-handed 310
Helix 12
AB3
A
1621 1625Right-handed 310
Helix 13
AB4
A
1627 1638Right-handed alpha
Helix 14
AB5
A
1643 1661Right-handed alpha
Helix 15
AB6
B
1281 1289Right-handed 310
Helix 16
AB7
B
1296 1314Right-handed alpha
Helix 17
AB8
B
1336 1344Right-handed alpha
Helix 18
AB9
B
1406 1408Right-handed 310
Helix 19
AC1
B
1409 1429Right-handed alpha
Helix 20
AC2
B
1459 1477Right-handed alpha
Helix 21
AC3
B
1486 1493Right-handed alpha
Helix 22
AC4
B
1497 1501Right-handed 310
Helix 23
AC5
B
1507 1516Right-handed alpha
Helix 24
AC6
B
1582 1591Right-handed alpha
Helix 25
AC7
B
1602 1607Right-handed 310
Helix 26
AC8
B
1621 1625Right-handed 310
Helix 27
AC9
B
1627 1637Right-handed alpha
Helix 28
AD1
B
1643 1661Right-handed alpha
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There are 2 sheets in PDB entry 6PF1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1321 1334first strand
Strand 2
A
1352 1366anti-parallel
Strand 3
A
1369 1381anti-parallel
Strand 4
A
1392 1400anti-parallel
Strand 5
A
1432 1436parallel
Strand 6
A
1595 1599anti-parallel
Strand 7
A
1482 1485anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1321 1334first strand
Strand 2
B
1352 1365anti-parallel
Strand 3
B
1370 1381anti-parallel
Strand 4
B
1392 1400anti-parallel
Strand 5
B
1432 1436parallel
Strand 6
B
1595 1599anti-parallel
Strand 7
B
1482 1485anti-parallel
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