Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PFE entry

There are 5 chains in PDB entry 6PFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	VAL 521
B	GLU 3	VAL 521
C	GLU 3	VAL 521
D	GLU 3	VAL 521
E	GLU 3	VAL 521

There are 94 helices in PDB entry 6PFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	42	Right-handed alpha
Helix 2	AA2	A	56	62	Right-handed alpha
Helix 3	AA3	A	94	101	Right-handed 310
Helix 4	AA4	A	114	125	Right-handed alpha
Helix 5	AA5	A	194	207	Right-handed alpha
Helix 6	AA6	A	211	216	Right-handed alpha
Helix 7	AA7	A	220	224	Right-handed 310
Helix 8	AA8	A	237	251	Right-handed alpha
Helix 9	AA9	A	287	300	Right-handed alpha
Helix 10	AB1	A	305	310	Right-handed alpha
Helix 11	AB2	A	317	320	Right-handed 310
Helix 12	AB3	A	321	328	Right-handed alpha
Helix 13	AB4	A	341	348	Right-handed alpha
Helix 14	AB5	A	366	378	Right-handed alpha
Helix 15	AB6	A	393	397	Right-handed 310
Helix 16	AB7	A	429	450	Right-handed alpha
Helix 17	AB8	A	469	478	Right-handed alpha
Helix 18	AB9	A	495	499	Right-handed 310
Helix 19	AC1	A	500	502	Right-handed 310
Helix 20	AC2	B	29	42	Right-handed alpha
Helix 21	AC3	B	56	62	Right-handed alpha
Helix 22	AC4	B	94	100	Right-handed alpha
Helix 23	AC5	B	115	125	Right-handed alpha
Helix 24	AC6	B	194	207	Right-handed alpha
Helix 25	AC7	B	211	216	Right-handed alpha
Helix 26	AC8	B	220	224	Right-handed 310
Helix 27	AC9	B	237	251	Right-handed alpha
Helix 28	AD1	B	287	300	Right-handed alpha
Helix 29	AD2	B	305	310	Right-handed alpha
Helix 30	AD3	B	317	320	Right-handed 310
Helix 31	AD4	B	321	328	Right-handed alpha
Helix 32	AD5	B	341	348	Right-handed alpha
Helix 33	AD6	B	366	378	Right-handed alpha
Helix 34	AD7	B	393	397	Right-handed 310
Helix 35	AD8	B	429	450	Right-handed alpha
Helix 36	AD9	B	469	478	Right-handed alpha
Helix 37	AE1	B	495	499	Right-handed 310
Helix 38	AE2	B	500	502	Right-handed 310
Helix 39	AE3	C	29	42	Right-handed alpha
Helix 40	AE4	C	56	62	Right-handed alpha
Helix 41	AE5	C	94	102	Right-handed 310
Helix 42	AE6	C	114	125	Right-handed alpha
Helix 43	AE7	C	194	207	Right-handed alpha
Helix 44	AE8	C	211	216	Right-handed alpha
Helix 45	AE9	C	220	224	Right-handed 310
Helix 46	AF1	C	237	251	Right-handed alpha
Helix 47	AF2	C	287	300	Right-handed alpha
Helix 48	AF3	C	305	310	Right-handed alpha
Helix 49	AF4	C	317	320	Right-handed 310
Helix 50	AF5	C	321	328	Right-handed alpha
Helix 51	AF6	C	341	348	Right-handed alpha
Helix 52	AF7	C	366	378	Right-handed alpha
Helix 53	AF8	C	393	397	Right-handed 310
Helix 54	AF9	C	429	450	Right-handed alpha
Helix 55	AG1	C	469	478	Right-handed alpha
Helix 56	AG2	C	495	499	Right-handed 310
Helix 57	AG3	C	500	502	Right-handed 310
Helix 58	AG4	D	29	42	Right-handed alpha
Helix 59	AG5	D	56	62	Right-handed alpha
Helix 60	AG6	D	94	98	Right-handed 310
Helix 61	AG7	D	114	125	Right-handed alpha
Helix 62	AG8	D	194	207	Right-handed alpha
Helix 63	AG9	D	211	216	Right-handed alpha
Helix 64	AH1	D	220	224	Right-handed 310
Helix 65	AH2	D	237	251	Right-handed alpha
Helix 66	AH3	D	287	300	Right-handed alpha
Helix 67	AH4	D	305	310	Right-handed alpha
Helix 68	AH5	D	317	320	Right-handed 310
Helix 69	AH6	D	321	328	Right-handed alpha
Helix 70	AH7	D	341	348	Right-handed alpha
Helix 71	AH8	D	366	378	Right-handed alpha
Helix 72	AH9	D	393	397	Right-handed 310
Helix 73	AI1	D	429	450	Right-handed alpha
Helix 74	AI2	D	469	478	Right-handed alpha
Helix 75	AI3	D	495	499	Right-handed 310
Helix 76	AI4	D	500	502	Right-handed 310
Helix 77	AI5	E	29	42	Right-handed alpha
Helix 78	AI6	E	56	62	Right-handed alpha
Helix 79	AI7	E	94	98	Right-handed 310
Helix 80	AI8	E	114	125	Right-handed alpha
Helix 81	AI9	E	194	207	Right-handed alpha
Helix 82	AJ1	E	211	216	Right-handed alpha
Helix 83	AJ2	E	220	224	Right-handed 310
Helix 84	AJ3	E	237	251	Right-handed alpha
Helix 85	AJ4	E	287	300	Right-handed alpha
Helix 86	AJ5	E	305	310	Right-handed alpha
Helix 87	AJ6	E	321	328	Right-handed alpha
Helix 88	AJ7	E	341	348	Right-handed alpha
Helix 89	AJ8	E	366	378	Right-handed alpha
Helix 90	AJ9	E	393	397	Right-handed 310
Helix 91	AK1	E	429	450	Right-handed alpha
Helix 92	AK2	E	469	478	Right-handed alpha
Helix 93	AK3	E	495	499	Right-handed 310
Helix 94	AK4	E	500	502	Right-handed 310

There are 25 sheets in PDB entry 6PFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	70	75	parallel
Strand 3	A	49	55	parallel
Strand 4	A	107	112	parallel
Strand 5	A	6	13	parallel
Strand 6	A	130	136	parallel
Strand 7	A	173	177	anti-parallel
Strand 8	A	154	159	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	145	146	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	168	170	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	262	273	anti-parallel
Strand 3	A	452	466	anti-parallel
Strand 4	A	415	426	parallel
Strand 5	A	403	410	anti-parallel
Strand 6	A	385	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	504	507	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	70	75	parallel
Strand 3	B	49	55	parallel
Strand 4	B	107	112	parallel
Strand 5	B	6	13	parallel
Strand 6	B	130	136	parallel
Strand 7	B	173	177	anti-parallel
Strand 8	B	154	159	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	145	146	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	168	170	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	262	273	anti-parallel
Strand 3	B	452	466	anti-parallel
Strand 4	B	415	426	parallel
Strand 5	B	403	410	anti-parallel
Strand 6	B	385	387	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	504	507	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	70	75	parallel
Strand 3	C	49	55	parallel
Strand 4	C	107	112	parallel
Strand 5	C	6	13	parallel
Strand 6	C	130	136	parallel
Strand 7	C	173	177	anti-parallel
Strand 8	C	154	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	145	146	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	168	170	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	262	273	anti-parallel
Strand 3	C	452	466	anti-parallel
Strand 4	C	415	426	parallel
Strand 5	C	403	410	anti-parallel
Strand 6	C	385	387	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	504	507	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	70	75	parallel
Strand 3	D	49	55	parallel
Strand 4	D	107	112	parallel
Strand 5	D	6	13	parallel
Strand 6	D	130	136	parallel
Strand 7	D	173	177	anti-parallel
Strand 8	D	154	159	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	145	146	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	168	170	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	262	273	anti-parallel
Strand 3	D	452	466	anti-parallel
Strand 4	D	415	426	parallel
Strand 5	D	403	410	anti-parallel
Strand 6	D	385	387	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	489	first strand
Strand 2	D	504	507	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	70	75	parallel
Strand 3	E	49	55	parallel
Strand 4	E	107	112	parallel
Strand 5	E	6	13	parallel
Strand 6	E	130	136	parallel
Strand 7	E	173	177	anti-parallel
Strand 8	E	154	159	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	145	146	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	168	170	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	262	273	anti-parallel
Strand 3	E	452	466	anti-parallel
Strand 4	E	415	426	parallel
Strand 5	E	403	410	anti-parallel
Strand 6	E	385	387	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	486	489	first strand
Strand 2	E	504	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFE