Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PFG entry

There are 5 chains in PDB entry 6PFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	VAL 521
B	GLU 3	VAL 521
C	GLU 3	VAL 521
D	GLU 3	VAL 521
E	GLU 3	VAL 521

There are100 helices in PDB entry 6PFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	42	Right-handed alpha
Helix 2	AA2	A	56	62	Right-handed alpha
Helix 3	AA3	A	93	98	Right-handed alpha
Helix 4	AA4	A	98	103	Right-handed alpha
Helix 5	AA5	A	115	125	Right-handed alpha
Helix 6	AA6	A	194	207	Right-handed alpha
Helix 7	AA7	A	211	216	Right-handed alpha
Helix 8	AA8	A	220	224	Right-handed 310
Helix 9	AA9	A	237	251	Right-handed alpha
Helix 10	AB1	A	287	300	Right-handed alpha
Helix 11	AB2	A	304	311	Right-handed alpha
Helix 12	AB3	A	317	320	Right-handed 310
Helix 13	AB4	A	321	328	Right-handed alpha
Helix 14	AB5	A	343	348	Right-handed alpha
Helix 15	AB6	A	366	378	Right-handed alpha
Helix 16	AB7	A	393	397	Right-handed 310
Helix 17	AB8	A	429	450	Right-handed alpha
Helix 18	AB9	A	469	478	Right-handed alpha
Helix 19	AC1	A	495	499	Right-handed 310
Helix 20	AC2	A	500	502	Right-handed 310
Helix 21	AC3	B	29	42	Right-handed alpha
Helix 22	AC4	B	56	62	Right-handed alpha
Helix 23	AC5	B	95	97	Right-handed 310
Helix 24	AC6	B	98	103	Right-handed alpha
Helix 25	AC7	B	115	125	Right-handed alpha
Helix 26	AC8	B	194	207	Right-handed alpha
Helix 27	AC9	B	211	216	Right-handed alpha
Helix 28	AD1	B	220	224	Right-handed 310
Helix 29	AD2	B	237	251	Right-handed alpha
Helix 30	AD3	B	287	300	Right-handed alpha
Helix 31	AD4	B	304	311	Right-handed alpha
Helix 32	AD5	B	317	320	Right-handed 310
Helix 33	AD6	B	321	328	Right-handed alpha
Helix 34	AD7	B	343	348	Right-handed alpha
Helix 35	AD8	B	366	378	Right-handed alpha
Helix 36	AD9	B	393	397	Right-handed 310
Helix 37	AE1	B	429	450	Right-handed alpha
Helix 38	AE2	B	469	478	Right-handed alpha
Helix 39	AE3	B	495	499	Right-handed 310
Helix 40	AE4	B	500	502	Right-handed 310
Helix 41	AE5	C	29	42	Right-handed alpha
Helix 42	AE6	C	56	62	Right-handed alpha
Helix 43	AE7	C	93	98	Right-handed alpha
Helix 44	AE8	C	98	103	Right-handed alpha
Helix 45	AE9	C	115	125	Right-handed alpha
Helix 46	AF1	C	194	207	Right-handed alpha
Helix 47	AF2	C	211	216	Right-handed alpha
Helix 48	AF3	C	220	224	Right-handed 310
Helix 49	AF4	C	237	251	Right-handed alpha
Helix 50	AF5	C	287	300	Right-handed alpha
Helix 51	AF6	C	304	311	Right-handed alpha
Helix 52	AF7	C	317	320	Right-handed 310
Helix 53	AF8	C	321	328	Right-handed alpha
Helix 54	AF9	C	343	348	Right-handed alpha
Helix 55	AG1	C	366	378	Right-handed alpha
Helix 56	AG2	C	393	397	Right-handed 310
Helix 57	AG3	C	429	450	Right-handed alpha
Helix 58	AG4	C	469	478	Right-handed alpha
Helix 59	AG5	C	495	499	Right-handed 310
Helix 60	AG6	C	500	502	Right-handed 310
Helix 61	AG7	D	29	42	Right-handed alpha
Helix 62	AG8	D	56	62	Right-handed alpha
Helix 63	AG9	D	95	97	Right-handed 310
Helix 64	AH1	D	98	103	Right-handed alpha
Helix 65	AH2	D	115	125	Right-handed alpha
Helix 66	AH3	D	194	207	Right-handed alpha
Helix 67	AH4	D	211	216	Right-handed alpha
Helix 68	AH5	D	220	224	Right-handed 310
Helix 69	AH6	D	237	251	Right-handed alpha
Helix 70	AH7	D	287	300	Right-handed alpha
Helix 71	AH8	D	305	311	Right-handed alpha
Helix 72	AH9	D	317	320	Right-handed 310
Helix 73	AI1	D	321	328	Right-handed alpha
Helix 74	AI2	D	343	348	Right-handed alpha
Helix 75	AI3	D	366	378	Right-handed alpha
Helix 76	AI4	D	393	397	Right-handed 310
Helix 77	AI5	D	429	450	Right-handed alpha
Helix 78	AI6	D	469	478	Right-handed alpha
Helix 79	AI7	D	495	499	Right-handed 310
Helix 80	AI8	D	500	502	Right-handed 310
Helix 81	AI9	E	29	42	Right-handed alpha
Helix 82	AJ1	E	56	62	Right-handed alpha
Helix 83	AJ2	E	93	98	Right-handed alpha
Helix 84	AJ3	E	98	103	Right-handed alpha
Helix 85	AJ4	E	115	125	Right-handed alpha
Helix 86	AJ5	E	194	207	Right-handed alpha
Helix 87	AJ6	E	211	216	Right-handed alpha
Helix 88	AJ7	E	220	224	Right-handed 310
Helix 89	AJ8	E	237	251	Right-handed alpha
Helix 90	AJ9	E	287	300	Right-handed alpha
Helix 91	AK1	E	304	311	Right-handed alpha
Helix 92	AK2	E	317	320	Right-handed 310
Helix 93	AK3	E	321	328	Right-handed alpha
Helix 94	AK4	E	343	348	Right-handed alpha
Helix 95	AK5	E	366	378	Right-handed alpha
Helix 96	AK6	E	393	397	Right-handed 310
Helix 97	AK7	E	429	450	Right-handed alpha
Helix 98	AK8	E	469	478	Right-handed alpha
Helix 99	AK9	E	495	499	Right-handed 310
Helix 100	AL1	E	500	502	Right-handed 310

There are 25 sheets in PDB entry 6PFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	71	75	parallel
Strand 3	A	49	55	parallel
Strand 4	A	107	114	parallel
Strand 5	A	5	13	parallel
Strand 6	A	130	136	parallel
Strand 7	A	168	177	anti-parallel
Strand 8	A	154	159	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	71	75	parallel
Strand 3	A	49	55	parallel
Strand 4	A	107	114	parallel
Strand 5	A	5	13	parallel
Strand 6	A	130	136	parallel
Strand 7	A	168	177	anti-parallel
Strand 8	A	163	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	145	146	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	262	273	anti-parallel
Strand 3	A	452	466	anti-parallel
Strand 4	A	415	426	parallel
Strand 5	A	403	410	anti-parallel
Strand 6	A	385	387	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	504	507	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	71	75	parallel
Strand 3	B	49	55	parallel
Strand 4	B	107	114	parallel
Strand 5	B	5	13	parallel
Strand 6	B	130	136	parallel
Strand 7	B	168	177	anti-parallel
Strand 8	B	154	159	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	71	75	parallel
Strand 3	B	49	55	parallel
Strand 4	B	107	114	parallel
Strand 5	B	5	13	parallel
Strand 6	B	130	136	parallel
Strand 7	B	168	177	anti-parallel
Strand 8	B	163	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	145	146	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	262	273	anti-parallel
Strand 3	B	452	466	anti-parallel
Strand 4	B	415	426	parallel
Strand 5	B	403	410	anti-parallel
Strand 6	B	385	387	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	504	507	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	71	75	parallel
Strand 3	C	49	55	parallel
Strand 4	C	107	114	parallel
Strand 5	C	5	13	parallel
Strand 6	C	130	136	parallel
Strand 7	C	168	177	anti-parallel
Strand 8	C	154	159	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	71	75	parallel
Strand 3	C	49	55	parallel
Strand 4	C	107	114	parallel
Strand 5	C	5	13	parallel
Strand 6	C	130	136	parallel
Strand 7	C	168	177	anti-parallel
Strand 8	C	163	165	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	145	146	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	262	273	anti-parallel
Strand 3	C	452	466	anti-parallel
Strand 4	C	415	426	parallel
Strand 5	C	403	410	anti-parallel
Strand 6	C	385	387	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	504	507	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	71	75	parallel
Strand 3	D	49	55	parallel
Strand 4	D	107	114	parallel
Strand 5	D	5	13	parallel
Strand 6	D	130	136	parallel
Strand 7	D	168	177	anti-parallel
Strand 8	D	154	159	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	71	75	parallel
Strand 3	D	49	55	parallel
Strand 4	D	107	114	parallel
Strand 5	D	5	13	parallel
Strand 6	D	130	136	parallel
Strand 7	D	168	177	anti-parallel
Strand 8	D	163	165	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	145	146	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	262	273	anti-parallel
Strand 3	D	452	466	anti-parallel
Strand 4	D	415	426	parallel
Strand 5	D	403	410	anti-parallel
Strand 6	D	385	387	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	489	first strand
Strand 2	D	504	507	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	71	75	parallel
Strand 3	E	49	55	parallel
Strand 4	E	107	114	parallel
Strand 5	E	5	13	parallel
Strand 6	E	130	136	parallel
Strand 7	E	168	177	anti-parallel
Strand 8	E	154	159	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	71	75	parallel
Strand 3	E	49	55	parallel
Strand 4	E	107	114	parallel
Strand 5	E	5	13	parallel
Strand 6	E	130	136	parallel
Strand 7	E	168	177	anti-parallel
Strand 8	E	163	165	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	145	146	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	254	first strand
Strand 2	E	262	273	anti-parallel
Strand 3	E	452	466	anti-parallel
Strand 4	E	415	426	parallel
Strand 5	E	403	410	anti-parallel
Strand 6	E	385	387	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	486	489	first strand
Strand 2	E	504	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFG