Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PFK entry

There are 4 chains in PDB entry 6PFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 320
B
 MET 1ILE 320
C
 MET 1ILE 320
D
 MET 1ILE 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6PFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
40 46Right-handed alpha
Helix 3
3
A
54 57Right-handed 310
Helix 4
4
A
74 77Right-handed 310
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
103 114Right-handed alpha
Helix 7
7
A
139 155Right-handed alpha
Helix 8
8
A
175 184Right-handed alpha
Helix 9
9
A
198 211Right-handed alpha
Helix 10
10
A
227 238Right-handed alpha
Helix 11
11
A
248 252Right-handed 310
Helix 12
12
A
258 276Right-handed alpha
Helix 13
13
A
296 301Right-handed alpha
Helix 14
14
A
309 318Right-handed alpha
Helix 15
15
B
16 30Right-handed alpha
Helix 16
16
B
40 45Right-handed alpha
Helix 17
17
B
54 57Right-handed 310
Helix 18
18
B
75 77Right-handed 310
Helix 19
19
B
79 92Right-handed alpha
Helix 20
20
B
103 115Right-handed alpha
Helix 21
21
B
139 155Right-handed alpha
Helix 22
22
B
175 184Right-handed alpha
Helix 23
23
B
198 211Right-handed alpha
Helix 24
24
B
227 238Right-handed alpha
Helix 25
25
B
248 252Right-handed 310
Helix 26
26
B
258 276Right-handed alpha
Helix 27
27
B
296 301Right-handed alpha
Helix 28
28
B
309 318Right-handed alpha
Helix 29
29
C
16 30Right-handed alpha
Helix 30
30
C
40 46Right-handed alpha
Helix 31
31
C
54 57Right-handed 310
Helix 32
32
C
75 77Right-handed 310
Helix 33
33
C
79 92Right-handed alpha
Helix 34
34
C
103 114Right-handed alpha
Helix 35
35
C
139 155Right-handed alpha
Helix 36
36
C
175 183Right-handed alpha
Helix 37
37
C
198 211Right-handed alpha
Helix 38
38
C
222 224Right-handed 310
Helix 39
39
C
227 238Right-handed alpha
Helix 40
40
C
248 252Right-handed 310
Helix 41
41
C
258 276Right-handed alpha
Helix 42
42
C
296 301Right-handed alpha
Helix 43
43
C
309 318Right-handed alpha
Helix 44
44
D
16 29Right-handed alpha
Helix 45
45
D
40 46Right-handed alpha
Helix 46
46
D
54 57Right-handed 310
Helix 47
47
D
74 76Right-handed 310
Helix 48
48
D
79 92Right-handed alpha
Helix 49
49
D
103 115Right-handed alpha
Helix 50
50
D
139 155Right-handed alpha
Helix 51
51
D
175 184Right-handed alpha
Helix 52
52
D
198 210Right-handed alpha
Helix 53
53
D
227 238Right-handed alpha
Helix 54
54
D
248 250Right-handed 310
Helix 55
55
D
258 276Right-handed alpha
Helix 56
56
D
296 301Right-handed alpha
Helix 57
57
D
309 318Right-handed alpha
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There are 12 sheets in PDB entry 6PFK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
96 101parallel
Strand 3
A
3 8parallel
Strand 4
A
33 37parallel
Strand 5
A
49 52anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 246first strand
Strand 2
A
163 168parallel
Strand 3
A
216 221parallel
Strand 4
A
188 190parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 287first strand
Strand 2
A
290 295anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
96 101parallel
Strand 3
B
3 9parallel
Strand 4
B
33 37parallel
Strand 5
B
49 51anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 246first strand
Strand 2
B
163 168parallel
Strand 3
B
216 221parallel
Strand 4
B
188 190parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 287first strand
Strand 2
B
290 295anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 123first strand
Strand 2
C
96 101parallel
Strand 3
C
3 9parallel
Strand 4
C
33 37parallel
Strand 5
C
49 52anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 246first strand
Strand 2
C
163 168parallel
Strand 3
C
216 221parallel
Strand 4
C
188 190parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
282 287first strand
Strand 2
C
290 295anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 123first strand
Strand 2
D
96 101parallel
Strand 3
D
3 9parallel
Strand 4
D
33 37parallel
Strand 5
D
49 52anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
242 246first strand
Strand 2
D
163 168parallel
Strand 3
D
216 221parallel
Strand 4
D
188 190parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
282 287first strand
Strand 2
D
290 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il