Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PFO entry

There are 4 chains in PDB entry 6PFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -336PHE 137
B
 MET -336PHE 137
C
 LEU 16PRO 32
D
 LEU 16PRO 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 6PFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-319 -303Right-handed alpha
Helix 2
AA2
A
-293 -282Right-handed alpha
Helix 3
AA3
A
-269 -262Right-handed alpha
Helix 4
AA4
A
-253 -248Right-handed alpha
Helix 5
AA5
A
-245 -238Right-handed alpha
Helix 6
AA6
A
-207 -205Right-handed 310
Helix 7
AA7
A
-204 -194Right-handed alpha
Helix 8
AA8
A
-182 -171Right-handed alpha
Helix 9
AA9
A
-150 -134Right-handed alpha
Helix 10
AB1
A
-126 -116Right-handed alpha
Helix 11
AB2
A
-107 -105Right-handed 310
Helix 12
AB3
A
-104 -96Right-handed alpha
Helix 13
AB4
A
-63 -52Right-handed alpha
Helix 14
AB5
A
-49 -40Right-handed alpha
Helix 15
AB6
A
-31 -23Right-handed alpha
Helix 16
AB7
A
-21 -8Right-handed alpha
Helix 17
AB8
A
0 17Right-handed alpha
Helix 18
AB9
A
21 36Right-handed alpha
Helix 19
AC1
A
37 41Right-handed 310
Helix 20
AC2
A
45 62Right-handed alpha
Helix 21
AC3
A
131 135Right-handed 310
Helix 22
AC4
B
-319 -303Right-handed alpha
Helix 23
AC5
B
-293 -282Right-handed alpha
Helix 24
AC6
B
-269 -262Right-handed alpha
Helix 25
AC7
B
-253 -248Right-handed alpha
Helix 26
AC8
B
-245 -238Right-handed alpha
Helix 27
AC9
B
-207 -205Right-handed 310
Helix 28
AD1
B
-204 -193Right-handed alpha
Helix 29
AD2
B
-182 -171Right-handed alpha
Helix 30
AD3
B
-150 -134Right-handed alpha
Helix 31
AD4
B
-126 -116Right-handed alpha
Helix 32
AD5
B
-107 -105Right-handed 310
Helix 33
AD6
B
-104 -96Right-handed alpha
Helix 34
AD7
B
-63 -52Right-handed alpha
Helix 35
AD8
B
-49 -38Right-handed alpha
Helix 36
AD9
B
-31 -23Right-handed alpha
Helix 37
AE1
B
-21 -8Right-handed alpha
Helix 38
AE2
B
0 17Right-handed alpha
Helix 39
AE3
B
21 36Right-handed alpha
Helix 40
AE4
B
37 41Right-handed 310
Helix 41
AE5
B
45 62Right-handed alpha
Helix 42
AE6
B
131 136Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 6PFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-300 -297first strand
Strand 2
A
-328 -325parallel
Strand 3
A
-276 -272parallel
Strand 4
A
-77 -69anti-parallel
Strand 5
A
-229 -224anti-parallel
Strand 6
A
-34 -33anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-300 -297first strand
Strand 2
A
-328 -325parallel
Strand 3
A
-276 -272parallel
Strand 4
A
-77 -69anti-parallel
Strand 5
A
-7 -6parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-237 -236first strand
Strand 2
A
-233 -232anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-190 -188first strand
Strand 2
A
-113 -108parallel
Strand 3
A
-221 -217anti-parallel
Strand 4
A
-93 -90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-165 -163first strand
Strand 2
A
-160 -158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-86 -85first strand
Strand 2
A
-82 -81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
107 111anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-301 -297first strand
Strand 2
B
-329 -325parallel
Strand 3
B
-276 -272parallel
Strand 4
B
-77 -69anti-parallel
Strand 5
B
-229 -224anti-parallel
Strand 6
B
-34 -33anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-301 -297first strand
Strand 2
B
-329 -325parallel
Strand 3
B
-276 -272parallel
Strand 4
B
-77 -69anti-parallel
Strand 5
B
-7 -6parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-237 -236first strand
Strand 2
B
-233 -232anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-190 -188first strand
Strand 2
B
-113 -108parallel
Strand 3
B
-221 -217anti-parallel
Strand 4
B
-93 -90anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-165 -163first strand
Strand 2
B
-160 -158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-86 -85first strand
Strand 2
B
-82 -81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
107 111anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il