Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PFX entry

There are 2 chains in PDB entry 6PFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32LEU 421
B
 ASN 33LEU 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6PFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 44Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
70 75Right-handed 310
Helix 5
AA5
A
80 88Right-handed alpha
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
116 119Right-handed 310
Helix 8
AA8
A
128 132Right-handed 310
Helix 9
AA9
A
138 146Right-handed alpha
Helix 10
AB1
A
147 158Right-handed alpha
Helix 11
AB2
A
162 173Right-handed alpha
Helix 12
AB3
A
175 180Right-handed alpha
Helix 13
AB4
A
181 193Right-handed alpha
Helix 14
AB5
A
198 203Right-handed alpha
Helix 15
AB6
A
205 219Right-handed alpha
Helix 16
AB7
A
227 236Right-handed alpha
Helix 17
AB8
A
243 259Right-handed alpha
Helix 18
AB9
A
267 275Right-handed alpha
Helix 19
AC1
A
278 283Right-handed alpha
Helix 20
AC2
A
295 310Right-handed alpha
Helix 21
AC3
A
322 330Right-handed alpha
Helix 22
AC4
A
332 349Right-handed alpha
Helix 23
AC5
A
359 362Right-handed 310
Helix 24
AC6
A
375 391Right-handed alpha
Helix 25
AC7
A
403 407Right-handed 310
Helix 26
AC8
A
408 414Right-handed alpha
Helix 27
AC9
A
415 419Right-handed 310
Helix 28
AD1
B
34 44Right-handed alpha
Helix 29
AD2
B
45 51Right-handed alpha
Helix 30
AD3
B
52 61Right-handed alpha
Helix 31
AD4
B
70 75Right-handed 310
Helix 32
AD5
B
80 88Right-handed alpha
Helix 33
AD6
B
103 115Right-handed alpha
Helix 34
AD7
B
116 119Right-handed 310
Helix 35
AD8
B
128 132Right-handed 310
Helix 36
AD9
B
138 146Right-handed alpha
Helix 37
AE1
B
147 158Right-handed alpha
Helix 38
AE2
B
162 173Right-handed alpha
Helix 39
AE3
B
175 180Right-handed alpha
Helix 40
AE4
B
181 193Right-handed alpha
Helix 41
AE5
B
198 203Right-handed alpha
Helix 42
AE6
B
205 218Right-handed alpha
Helix 43
AE7
B
227 236Right-handed alpha
Helix 44
AE8
B
243 259Right-handed alpha
Helix 45
AE9
B
267 275Right-handed alpha
Helix 46
AF1
B
276 283Right-handed 310
Helix 47
AF2
B
295 310Right-handed alpha
Helix 48
AF3
B
322 330Right-handed alpha
Helix 49
AF4
B
332 350Right-handed alpha
Helix 50
AF5
B
359 362Right-handed 310
Helix 51
AF6
B
375 391Right-handed alpha
Helix 52
AF7
B
403 407Right-handed 310
Helix 53
AF8
B
408 414Right-handed alpha
Helix 54
AF9
B
415 419Right-handed 310
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There are 2 sheets in PDB entry 6PFX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
64 68parallel
Strand 3
A
122 126parallel
Strand 4
A
313 318parallel
Strand 5
A
355 357parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
64 68parallel
Strand 3
B
122 126parallel
Strand 4
B
313 318parallel
Strand 5
B
355 357parallel
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