Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PFZ entry

There are 3 chains in PDB entry 6PFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	PHE 551
A	MET 1	PHE 551
B	MET 1	ILE 249

There are 67 helices in PDB entry 6PFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	9	23	Right-handed alpha
Helix 2	AA2	D	40	42	Right-handed 310
Helix 3	AA3	D	43	49	Right-handed alpha
Helix 4	AA4	D	54	60	Right-handed 310
Helix 5	AA5	D	68	77	Right-handed alpha
Helix 6	AA6	D	138	151	Right-handed alpha
Helix 7	AA7	D	162	174	Right-handed alpha
Helix 8	AA8	D	194	208	Right-handed alpha
Helix 9	AA9	D	253	259	Right-handed alpha
Helix 10	AB1	D	304	320	Right-handed alpha
Helix 11	AB2	D	348	355	Right-handed alpha
Helix 12	AB3	D	403	416	Right-handed alpha
Helix 13	AB4	D	419	424	Right-handed alpha
Helix 14	AB5	D	439	453	Right-handed alpha
Helix 15	AB6	D	498	503	Right-handed alpha
Helix 16	AB7	D	522	536	Right-handed alpha
Helix 17	AB8	D	545	550	Right-handed 310
Helix 18	AB9	A	9	23	Right-handed alpha
Helix 19	AC1	A	40	42	Right-handed 310
Helix 20	AC2	A	43	49	Right-handed alpha
Helix 21	AC3	A	54	59	Right-handed 310
Helix 22	AC4	A	68	77	Right-handed alpha
Helix 23	AC5	A	138	151	Right-handed alpha
Helix 24	AC6	A	162	174	Right-handed alpha
Helix 25	AC7	A	196	208	Right-handed alpha
Helix 26	AC8	A	253	259	Right-handed alpha
Helix 27	AC9	A	304	320	Right-handed alpha
Helix 28	AD1	A	348	355	Right-handed alpha
Helix 29	AD2	A	403	416	Right-handed alpha
Helix 30	AD3	A	419	424	Right-handed alpha
Helix 31	AD4	A	439	453	Right-handed alpha
Helix 32	AD5	A	498	503	Right-handed alpha
Helix 33	AD6	A	522	535	Right-handed alpha
Helix 34	AD7	A	545	550	Right-handed 310
Helix 35	AD8	B	9	23	Right-handed alpha
Helix 36	AD9	B	40	42	Right-handed 310
Helix 37	AE1	B	43	49	Right-handed alpha
Helix 38	AE2	B	54	60	Right-handed 310
Helix 39	AE3	B	68	77	Right-handed alpha
Helix 40	AE4	B	138	151	Right-handed alpha
Helix 41	AE5	B	162	175	Right-handed alpha
Helix 42	AE6	B	194	208	Right-handed alpha
Helix 43	AE7	B	253	259	Right-handed alpha
Helix 44	AE8	B	304	320	Right-handed alpha
Helix 45	AE9	B	348	355	Right-handed alpha
Helix 46	AF1	B	403	416	Right-handed alpha
Helix 47	AF2	B	419	425	Right-handed alpha
Helix 48	AF3	B	439	453	Right-handed alpha
Helix 49	AF4	B	498	502	Right-handed 310
Helix 50	AF5	B	522	535	Right-handed alpha
Helix 51	AF6	C	9	23	Right-handed alpha
Helix 52	AF7	C	40	42	Right-handed 310
Helix 53	AF8	C	43	49	Right-handed alpha
Helix 54	AF9	C	54	59	Right-handed 310
Helix 55	AG1	C	68	77	Right-handed alpha
Helix 56	AG2	C	138	151	Right-handed alpha
Helix 57	AG3	C	162	174	Right-handed alpha
Helix 58	AG4	C	194	208	Right-handed alpha
Helix 59	AG5	C	253	258	Right-handed alpha
Helix 60	AG6	C	304	320	Right-handed alpha
Helix 61	AG7	C	348	355	Right-handed alpha
Helix 62	AG8	C	403	417	Right-handed alpha
Helix 63	AG9	C	419	425	Right-handed alpha
Helix 64	AH1	C	439	453	Right-handed alpha
Helix 65	AH2	C	498	503	Right-handed alpha
Helix 66	AH3	C	522	536	Right-handed alpha
Helix 67	AH4	C	545	550	Right-handed 310

There are 35 sheets in PDB entry 6PFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	27	32	parallel
Strand 3	D	2	6	parallel
Strand 4	D	111	114	parallel
Strand 5	D	282	284	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	95	100	anti-parallel
Strand 3	D	103	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	249	251	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	242	245	parallel
Strand 3	D	155	159	parallel
Strand 4	D	178	183	parallel
Strand 5	D	210	214	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	221	first strand
Strand 2	D	230	232	anti-parallel
Strand 3	D	236	238	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	299	300	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	337	first strand
Strand 2	D	340	346	anti-parallel
Strand 3	D	392	399	anti-parallel
Strand 4	D	378	386	anti-parallel
Strand 5	D	359	363	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	337	first strand
Strand 2	D	340	346	anti-parallel
Strand 3	D	392	399	anti-parallel
Strand 4	D	378	386	anti-parallel
Strand 5	D	366	367	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	459	first strand
Strand 2	D	540	543	parallel
Strand 3	D	515	518	parallel
Strand 4	D	474	477	parallel
Strand 5	D	494	496	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	27	31	parallel
Strand 3	A	2	6	parallel
Strand 4	A	111	114	parallel
Strand 5	A	282	284	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	90	first strand
Strand 2	A	95	100	anti-parallel
Strand 3	A	103	108	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	249	251	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	242	245	parallel
Strand 3	A	155	159	parallel
Strand 4	A	178	182	parallel
Strand 5	A	210	213	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	236	239	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	299	300	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	392	399	anti-parallel
Strand 4	A	378	386	anti-parallel
Strand 5	A	359	363	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	392	399	anti-parallel
Strand 4	A	378	386	anti-parallel
Strand 5	A	366	367	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	540	543	parallel
Strand 3	A	514	518	parallel
Strand 4	A	473	477	parallel
Strand 5	A	494	496	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	27	31	parallel
Strand 3	B	2	6	parallel
Strand 4	B	111	114	parallel
Strand 5	B	282	284	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	95	99	anti-parallel
Strand 3	B	104	108	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	249	251	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	242	245	parallel
Strand 3	B	155	159	parallel
Strand 4	B	178	182	parallel
Strand 5	B	210	213	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	229	231	anti-parallel
Strand 3	B	237	239	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	299	300	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	337	first strand
Strand 2	B	340	346	anti-parallel
Strand 3	B	392	399	anti-parallel
Strand 4	B	378	386	anti-parallel
Strand 5	B	359	363	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	337	first strand
Strand 2	B	340	346	anti-parallel
Strand 3	B	392	399	anti-parallel
Strand 4	B	378	386	anti-parallel
Strand 5	B	366	367	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	540	543	parallel
Strand 3	B	515	518	parallel
Strand 4	B	474	477	parallel
Strand 5	B	494	496	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	27	31	parallel
Strand 3	C	2	6	parallel
Strand 4	C	111	114	parallel
Strand 5	C	282	284	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	90	first strand
Strand 2	C	95	100	anti-parallel
Strand 3	C	103	108	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	249	251	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	242	245	parallel
Strand 3	C	155	159	parallel
Strand 4	C	178	182	parallel
Strand 5	C	210	213	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	230	231	anti-parallel
Strand 3	C	237	238	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	299	300	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	341	346	anti-parallel
Strand 3	C	392	399	anti-parallel
Strand 4	C	378	386	anti-parallel
Strand 5	C	359	367	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	459	first strand
Strand 2	C	540	543	parallel
Strand 3	C	515	518	parallel
Strand 4	C	474	477	parallel
Strand 5	C	494	496	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PFZ