Analysis of interatomic Contacts of Structural Units in PDB entry:
6PGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PGM entry

There are 2 chains in PDB entry 6PGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2MET 296
B
 MET 2MET 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6PGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
10 27Right-handed alpha
Helix 3
AA3
A
32 44Right-handed alpha
Helix 4
AA4
A
75 95Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
128 131Right-handed 310
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
156 165Right-handed 310
Helix 10
AB1
A
191 193Right-handed 310
Helix 11
AB2
A
195 202Right-handed alpha
Helix 12
AB3
A
203 206Right-handed 310
Helix 13
AB4
A
207 212Right-handed alpha
Helix 14
AB5
A
213 215Right-handed 310
Helix 15
AB6
A
239 241Right-handed 310
Helix 16
AB7
A
242 247Right-handed alpha
Helix 17
AB8
A
250 263Right-handed alpha
Helix 18
AB9
A
275 280Right-handed alpha
Helix 19
AC1
B
3 9Right-handed 310
Helix 20
AC2
B
12 28Right-handed alpha
Helix 21
AC3
B
31 44Right-handed alpha
Helix 22
AC4
B
75 95Right-handed alpha
Helix 23
AC5
B
100 108Right-handed alpha
Helix 24
AC6
B
112 114Right-handed 310
Helix 25
AC7
B
128 131Right-handed 310
Helix 26
AC8
B
143 154Right-handed alpha
Helix 27
AC9
B
158 165Right-handed 310
Helix 28
AD1
B
191 193Right-handed 310
Helix 29
AD2
B
195 202Right-handed alpha
Helix 30
AD3
B
203 206Right-handed 310
Helix 31
AD4
B
207 212Right-handed alpha
Helix 32
AD5
B
213 215Right-handed 310
Helix 33
AD6
B
239 241Right-handed 310
Helix 34
AD7
B
242 247Right-handed alpha
Helix 35
AD8
B
250 262Right-handed alpha
Helix 36
AD9
B
275 280Right-handed alpha
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There are 2 sheets in PDB entry 6PGM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
61 71anti-parallel
Strand 3
A
116 126anti-parallel
Strand 4
A
133 140anti-parallel
Strand 5
A
167 175anti-parallel
Strand 6
A
180 189anti-parallel
Strand 7
A
217 223anti-parallel
Strand 8
A
232 237anti-parallel
Strand 9
A
269 274anti-parallel
Strand 10
A
285 294anti-parallel
Strand 11
A
49 58anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 58first strand
Strand 2
B
61 71anti-parallel
Strand 3
B
116 126anti-parallel
Strand 4
B
133 140anti-parallel
Strand 5
B
167 175anti-parallel
Strand 6
B
180 189anti-parallel
Strand 7
B
217 222anti-parallel
Strand 8
B
232 237anti-parallel
Strand 9
B
269 274anti-parallel
Strand 10
B
285 294anti-parallel
Strand 11
B
49 58anti-parallel
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