Analysis of interatomic Contacts of Structural Units in PDB entry:
6PGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PGR entry

There are 2 chains in PDB entry 6PGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13MET 363
B
 ALA 15PHE 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6PGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
50 52Right-handed 310
Helix 4
AA4
A
53 75Right-handed alpha
Helix 5
AA5
A
78 86Right-handed alpha
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
111 122Right-handed alpha
Helix 8
AA8
A
135 141Right-handed alpha
Helix 9
AA9
A
154 161Right-handed alpha
Helix 10
AB1
A
173 197Right-handed alpha
Helix 11
AB2
A
202 215Right-handed alpha
Helix 12
AB3
A
219 227Right-handed alpha
Helix 13
AB4
A
235 238Right-handed 310
Helix 14
AB5
A
239 252Right-handed alpha
Helix 15
AB6
A
258 272Right-handed alpha
Helix 16
AB7
A
289 294Right-handed 310
Helix 17
AB8
A
320 327Right-handed alpha
Helix 18
AB9
A
342 354Right-handed alpha
Helix 19
AC1
A
355 363Right-handed 310
Helix 20
AC2
B
35 39Right-handed 310
Helix 21
AC3
B
41 49Right-handed alpha
Helix 22
AC4
B
50 52Right-handed 310
Helix 23
AC5
B
53 74Right-handed alpha
Helix 24
AC6
B
84 89Right-handed alpha
Helix 25
AC7
B
104 110Right-handed alpha
Helix 26
AC8
B
111 122Right-handed alpha
Helix 27
AC9
B
135 141Right-handed alpha
Helix 28
AD1
B
154 161Right-handed alpha
Helix 29
AD2
B
173 198Right-handed alpha
Helix 30
AD3
B
202 215Right-handed alpha
Helix 31
AD4
B
219 227Right-handed alpha
Helix 32
AD5
B
235 238Right-handed 310
Helix 33
AD6
B
239 252Right-handed alpha
Helix 34
AD7
B
259 273Right-handed alpha
Helix 35
AD8
B
289 294Right-handed 310
Helix 36
AD9
B
320 327Right-handed alpha
Helix 37
AE1
B
342 354Right-handed alpha
Helix 38
AE2
B
355 362Right-handed 310
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There are 4 sheets in PDB entry 6PGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
127 130parallel
Strand 3
A
98 103parallel
Strand 4
A
276 281parallel
Strand 5
A
302 307parallel
Strand 6
A
337 340parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
163 166anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
127 130parallel
Strand 3
B
98 103parallel
Strand 4
B
276 281parallel
Strand 5
B
302 307parallel
Strand 6
B
337 340parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
163 166anti-parallel
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