Analysis of interatomic Contacts of Structural Units in PDB entry:
6PH4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PH4 entry

There are 2 chains in PDB entry 6PH4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18ASP 330
B
 GLN 18PRO 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6PH4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
50 57Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
68 73Right-handed 310
Helix 5
AA5
A
78 92Right-handed alpha
Helix 6
AA6
A
137 145Right-handed alpha
Helix 7
AA7
A
151 170Right-handed alpha
Helix 8
AA8
A
187 194Right-handed alpha
Helix 9
AA9
A
203 209Right-handed alpha
Helix 10
AB1
A
212 214Right-handed 310
Helix 11
AB2
A
215 222Right-handed alpha
Helix 12
AB3
A
275 287Right-handed alpha
Helix 13
AB4
A
290 298Right-handed alpha
Helix 14
AB5
A
299 304Right-handed 310
Helix 15
AB6
A
322 327Right-handed alpha
Helix 16
AB7
B
21 30Right-handed alpha
Helix 17
AB8
B
50 58Right-handed alpha
Helix 18
AB9
B
60 65Right-handed 310
Helix 19
AC1
B
68 73Right-handed 310
Helix 20
AC2
B
80 92Right-handed alpha
Helix 21
AC3
B
137 169Right-handed alpha
Helix 22
AC4
B
187 194Right-handed alpha
Helix 23
AC5
B
203 209Right-handed alpha
Helix 24
AC6
B
210 211Right-handed 310
Helix 25
AC7
B
212 214Right-handed 310
Helix 26
AC8
B
215 224Right-handed alpha
Helix 27
AC9
B
269 287Right-handed alpha
Helix 28
AD1
B
296 304Right-handed alpha
Helix 29
AD2
B
313 326Right-handed alpha
Helix 30
AD3
B
330 334Right-handed 310
Helix 31
AD4
B
341 349Right-handed alpha
Helix 32
AD5
B
352 357Right-handed alpha
Helix 33
AD6
B
371 392Right-handed alpha
Helix 34
AD7
B
437 442Right-handed alpha
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There are 5 sheets in PDB entry 6PH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
125 134anti-parallel
Strand 4
A
108 119anti-parallel
Strand 5
A
95 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
245 255anti-parallel
Strand 5
A
232 239anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
125 134anti-parallel
Strand 4
B
108 119anti-parallel
Strand 5
B
95 102anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
172 178anti-parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
245 255anti-parallel
Strand 5
B
233 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 364first strand
Strand 2
B
401 409parallel
Strand 3
B
416 424anti-parallel
Strand 4
B
463 469anti-parallel
Strand 5
B
455 458anti-parallel
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