Analysis of interatomic Contacts of Structural Units in PDB entry:
6PI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PI0 entry

There is 1 chain in PDB entry 6PI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LEU 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6PI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
296 313Right-handed alpha
Helix 2
AA2
A
315 320Right-handed alpha
Helix 3
AA3
A
329 334Right-handed alpha
Helix 4
AA4
A
338 352Right-handed alpha
Helix 5
AA5
A
387 398Right-handed alpha
Helix 6
AA6
A
415 421Right-handed alpha
Helix 7
AA7
A
422 425Right-handed 310
Helix 8
AA8
A
446 463Right-handed alpha
Helix 9
AA9
A
485 511Right-handed alpha
Helix 10
AB1
A
529 533Right-handed 310
Helix 11
AB2
A
547 556Right-handed alpha
Helix 12
AB3
A
560 562Right-handed 310
Helix 13
AB4
A
581 590Right-handed alpha
Helix 14
AB5
A
599 603Right-handed 310
Helix 15
AB6
A
604 628Right-handed alpha
Helix 16
AB7
A
693 699Right-handed alpha
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There are 9 sheets in PDB entry 6PI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
27 34anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
167 179anti-parallel
Strand 3
A
263 269anti-parallel
Strand 4
A
251 257anti-parallel
Strand 5
A
207 212anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
167 179anti-parallel
Strand 3
A
276 278anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 107first strand
Strand 2
A
125 133anti-parallel
Strand 3
A
138 146anti-parallel
Strand 4
A
152 161anti-parallel
Strand 5
A
289 294anti-parallel
Strand 6
A
240 245anti-parallel
Strand 7
A
225 230anti-parallel
Strand 8
A
184 192anti-parallel
Strand 9
A
195 203anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 107first strand
Strand 2
A
125 133anti-parallel
Strand 3
A
138 146anti-parallel
Strand 4
A
152 161anti-parallel
Strand 5
A
283 285anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
356 359parallel
Strand 3
A
401 406parallel
Strand 4
A
468 471parallel
Strand 5
A
515 518parallel
Strand 6
A
536 538parallel
Strand 7
A
564 569parallel
Strand 8
A
593 597parallel
Strand 9
A
326 328parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
440 441anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 634first strand
Strand 2
A
642 649anti-parallel
Strand 3
A
652 659anti-parallel
Strand 4
A
711 719anti-parallel
Strand 5
A
681 684anti-parallel
Strand 6
A
690 692anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 671first strand
Strand 2
A
701 702anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il