Analysis of interatomic Contacts of Structural Units in PDB entry:
6PI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PI1 entry

There are 4 chains in PDB entry 6PI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1SER 343
B
 LEU -2SER 343
C
 SER 0SER 343
D
 LEU -2SER 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6PI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed 310
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
64 81Right-handed alpha
Helix 5
AA5
A
104 112Right-handed alpha
Helix 6
AA6
A
123 144Right-handed alpha
Helix 7
AA7
A
172 184Right-handed alpha
Helix 8
AA8
A
199 206Right-handed alpha
Helix 9
AA9
A
237 241Right-handed 310
Helix 10
AB1
A
254 273Right-handed alpha
Helix 11
AB2
A
297 311Right-handed alpha
Helix 12
AB3
A
324 341Right-handed alpha
Helix 13
AB4
B
29 43Right-handed alpha
Helix 14
AB5
B
64 81Right-handed alpha
Helix 15
AB6
B
104 112Right-handed alpha
Helix 16
AB7
B
123 144Right-handed alpha
Helix 17
AB8
B
172 184Right-handed alpha
Helix 18
AB9
B
199 206Right-handed alpha
Helix 19
AC1
B
237 241Right-handed 310
Helix 20
AC2
B
254 273Right-handed alpha
Helix 21
AC3
B
297 310Right-handed alpha
Helix 22
AC4
B
324 340Right-handed alpha
Helix 23
AC5
C
6 12Right-handed 310
Helix 24
AC6
C
29 43Right-handed alpha
Helix 25
AC7
C
56 61Right-handed alpha
Helix 26
AC8
C
64 81Right-handed alpha
Helix 27
AC9
C
104 112Right-handed alpha
Helix 28
AD1
C
123 144Right-handed alpha
Helix 29
AD2
C
172 184Right-handed alpha
Helix 30
AD3
C
199 206Right-handed alpha
Helix 31
AD4
C
237 241Right-handed 310
Helix 32
AD5
C
254 273Right-handed alpha
Helix 33
AD6
C
297 310Right-handed alpha
Helix 34
AD7
C
324 340Right-handed alpha
Helix 35
AD8
D
6 12Right-handed 310
Helix 36
AD9
D
29 43Right-handed alpha
Helix 37
AE1
D
64 81Right-handed alpha
Helix 38
AE2
D
104 112Right-handed alpha
Helix 39
AE3
D
123 144Right-handed alpha
Helix 40
AE4
D
172 184Right-handed alpha
Helix 41
AE5
D
199 206Right-handed alpha
Helix 42
AE6
D
237 241Right-handed 310
Helix 43
AE7
D
254 273Right-handed alpha
Helix 44
AE8
D
297 310Right-handed alpha
Helix 45
AE9
D
324 340Right-handed alpha
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There are 8 sheets in PDB entry 6PI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
2 4parallel
Strand 3
A
148 151parallel
Strand 4
A
315 319parallel
Strand 5
A
276 281parallel
Strand 6
A
189 193parallel
Strand 7
A
212 219parallel
Strand 8
A
244 249parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
22 24anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
2 4parallel
Strand 3
B
148 151parallel
Strand 4
B
315 319parallel
Strand 5
B
276 281parallel
Strand 6
B
189 193parallel
Strand 7
B
212 219parallel
Strand 8
B
244 249parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
22 24anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
2 4parallel
Strand 3
C
148 151parallel
Strand 4
C
315 319parallel
Strand 5
C
276 281parallel
Strand 6
C
189 193parallel
Strand 7
C
212 219parallel
Strand 8
C
244 249parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
22 24anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
2 4parallel
Strand 3
D
148 151parallel
Strand 4
D
315 319parallel
Strand 5
D
276 281parallel
Strand 6
D
189 193parallel
Strand 7
D
212 219parallel
Strand 8
D
244 249parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
D
22 24anti-parallel
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