Analysis of interatomic Contacts of Structural Units in PDB entry:
6PII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PII entry

There are 4 chains in PDB entry 6PII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 25	LYS 360
B	GLN 27	LYS 360
C	GLU 28	ILE 358
D	GLU 28	ILE 358

There are 52 helices in PDB entry 6PII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	43	Right-handed 310
Helix 2	AA2	A	44	61	Right-handed alpha
Helix 3	AA3	A	75	88	Right-handed alpha
Helix 4	AA4	A	97	99	Right-handed 310
Helix 5	AA5	A	100	111	Right-handed alpha
Helix 6	AA6	A	135	150	Right-handed alpha
Helix 7	AA7	A	163	179	Right-handed alpha
Helix 8	AA8	A	196	210	Right-handed alpha
Helix 9	AA9	A	222	231	Right-handed alpha
Helix 10	AB1	A	242	246	Right-handed 310
Helix 11	AB2	A	258	271	Right-handed alpha
Helix 12	AB3	A	298	314	Right-handed alpha
Helix 13	AB4	A	340	346	Right-handed alpha
Helix 14	AB5	B	39	43	Right-handed 310
Helix 15	AB6	B	44	61	Right-handed alpha
Helix 16	AB7	B	75	88	Right-handed alpha
Helix 17	AB8	B	97	99	Right-handed 310
Helix 18	AB9	B	100	111	Right-handed alpha
Helix 19	AC1	B	135	150	Right-handed alpha
Helix 20	AC2	B	163	179	Right-handed alpha
Helix 21	AC3	B	196	210	Right-handed alpha
Helix 22	AC4	B	222	231	Right-handed alpha
Helix 23	AC5	B	242	246	Right-handed 310
Helix 24	AC6	B	258	271	Right-handed alpha
Helix 25	AC7	B	298	314	Right-handed alpha
Helix 26	AC8	B	340	346	Right-handed alpha
Helix 27	AC9	C	39	43	Right-handed 310
Helix 28	AD1	C	44	61	Right-handed alpha
Helix 29	AD2	C	75	88	Right-handed alpha
Helix 30	AD3	C	97	99	Right-handed 310
Helix 31	AD4	C	100	111	Right-handed alpha
Helix 32	AD5	C	135	150	Right-handed alpha
Helix 33	AD6	C	163	179	Right-handed alpha
Helix 34	AD7	C	196	210	Right-handed alpha
Helix 35	AD8	C	222	231	Right-handed alpha
Helix 36	AD9	C	242	246	Right-handed 310
Helix 37	AE1	C	258	271	Right-handed alpha
Helix 38	AE2	C	298	314	Right-handed alpha
Helix 39	AE3	C	340	346	Right-handed alpha
Helix 40	AE4	D	39	43	Right-handed 310
Helix 41	AE5	D	44	61	Right-handed alpha
Helix 42	AE6	D	75	88	Right-handed alpha
Helix 43	AE7	D	97	99	Right-handed 310
Helix 44	AE8	D	100	111	Right-handed alpha
Helix 45	AE9	D	135	150	Right-handed alpha
Helix 46	AF1	D	163	179	Right-handed alpha
Helix 47	AF2	D	196	210	Right-handed alpha
Helix 48	AF3	D	222	231	Right-handed alpha
Helix 49	AF4	D	242	246	Right-handed 310
Helix 50	AF5	D	258	271	Right-handed alpha
Helix 51	AF6	D	298	314	Right-handed alpha
Helix 52	AF7	D	340	346	Right-handed alpha

There are 12 sheets in PDB entry 6PII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	69	first strand
Strand 2	A	30	35	parallel
Strand 3	A	92	95	parallel
Strand 4	A	115	119	parallel
Strand 5	A	128	133	parallel
Strand 6	A	278	281	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	250	256	anti-parallel
Strand 3	A	234	239	parallel
Strand 4	A	214	217	parallel
Strand 5	A	154	159	parallel
Strand 6	A	185	190	parallel
Strand 7	A	354	356	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	333	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	30	35	parallel
Strand 3	B	92	95	parallel
Strand 4	B	115	119	parallel
Strand 5	B	128	133	parallel
Strand 6	B	278	281	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	234	239	parallel
Strand 4	B	214	217	parallel
Strand 5	B	154	159	parallel
Strand 6	B	185	190	parallel
Strand 7	B	354	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	331	333	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	30	35	parallel
Strand 3	C	92	95	parallel
Strand 4	C	115	119	parallel
Strand 5	C	128	133	parallel
Strand 6	C	278	281	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	250	256	anti-parallel
Strand 3	C	234	239	parallel
Strand 4	C	214	217	parallel
Strand 5	C	154	159	parallel
Strand 6	C	185	190	parallel
Strand 7	C	354	355	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	331	333	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	69	first strand
Strand 2	D	30	35	parallel
Strand 3	D	92	95	parallel
Strand 4	D	115	119	parallel
Strand 5	D	128	133	parallel
Strand 6	D	278	281	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	250	256	anti-parallel
Strand 3	D	234	239	parallel
Strand 4	D	214	217	parallel
Strand 5	D	154	159	parallel
Strand 6	D	185	190	parallel
Strand 7	D	354	355	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	331	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PII

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PII