Analysis of interatomic Contacts of Structural Units in PDB entry:
6PIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PIJ entry

There are 13 chains in PDB entry 6PIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	ASP 352
B	LYS 2	LYS 350
C	LYS 2	HIS 349
D	LYS 2	HIS 349
E	LYS 2	LYS 350
F	LYS 2	HIS 349
G	LEU 7	ASN 634
H	LYS 2	LEU 198
I	ALA 3	TRP 397
J	ALA 3	ARG 396
1	C 1	G 60
2	A 31	G 57
3	C 1	C 9

There are114 helices in PDB entry 6PIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	63	67	Right-handed 310
Helix 3	AA3	A	105	123	Right-handed alpha
Helix 4	AA4	A	125	135	Right-handed alpha
Helix 5	AA5	A	139	143	Right-handed 310
Helix 6	AA6	A	177	183	Right-handed alpha
Helix 7	AA7	A	186	200	Right-handed alpha
Helix 8	AA8	A	261	269	Right-handed alpha
Helix 9	AA9	A	305	310	Right-handed alpha
Helix 10	AB1	A	312	318	Right-handed alpha
Helix 11	AB2	A	328	344	Right-handed alpha
Helix 12	AB3	B	45	50	Right-handed alpha
Helix 13	AB4	B	63	67	Right-handed 310
Helix 14	AB5	B	105	123	Right-handed alpha
Helix 15	AB6	B	125	135	Right-handed alpha
Helix 16	AB7	B	139	143	Right-handed 310
Helix 17	AB8	B	186	192	Right-handed alpha
Helix 18	AB9	B	193	200	Right-handed alpha
Helix 19	AC1	B	261	269	Right-handed alpha
Helix 20	AC2	B	305	311	Right-handed alpha
Helix 21	AC3	B	312	322	Right-handed alpha
Helix 22	AC4	B	329	344	Right-handed alpha
Helix 23	AC5	C	45	49	Right-handed 310
Helix 24	AC6	C	63	67	Right-handed 310
Helix 25	AC7	C	96	99	Right-handed 310
Helix 26	AC8	C	107	123	Right-handed alpha
Helix 27	AC9	C	125	135	Right-handed alpha
Helix 28	AD1	C	139	143	Right-handed 310
Helix 29	AD2	C	177	182	Right-handed alpha
Helix 30	AD3	C	186	192	Right-handed alpha
Helix 31	AD4	C	193	200	Right-handed alpha
Helix 32	AD5	C	261	269	Right-handed alpha
Helix 33	AD6	C	305	311	Right-handed alpha
Helix 34	AD7	C	312	320	Right-handed alpha
Helix 35	AD8	C	330	342	Right-handed alpha
Helix 36	AD9	D	45	49	Right-handed 310
Helix 37	AE1	D	61	66	Right-handed alpha
Helix 38	AE2	D	105	123	Right-handed alpha
Helix 39	AE3	D	125	138	Right-handed alpha
Helix 40	AE4	D	139	143	Right-handed 310
Helix 41	AE5	D	177	182	Right-handed alpha
Helix 42	AE6	D	186	192	Right-handed alpha
Helix 43	AE7	D	194	200	Right-handed alpha
Helix 44	AE8	D	261	269	Right-handed alpha
Helix 45	AE9	D	299	303	Right-handed 310
Helix 46	AF1	D	305	311	Right-handed alpha
Helix 47	AF2	D	312	321	Right-handed alpha
Helix 48	AF3	D	330	344	Right-handed alpha
Helix 49	AF4	E	45	49	Right-handed 310
Helix 50	AF5	E	63	66	Right-handed 310
Helix 51	AF6	E	107	123	Right-handed alpha
Helix 52	AF7	E	125	138	Right-handed alpha
Helix 53	AF8	E	139	143	Right-handed 310
Helix 54	AF9	E	177	183	Right-handed alpha
Helix 55	AG1	E	183	192	Right-handed alpha
Helix 56	AG2	E	193	200	Right-handed alpha
Helix 57	AG3	E	260	269	Right-handed alpha
Helix 58	AG4	E	305	311	Right-handed alpha
Helix 59	AG5	E	312	320	Right-handed alpha
Helix 60	AG6	E	330	342	Right-handed alpha
Helix 61	AG7	F	107	123	Right-handed alpha
Helix 62	AG8	F	125	138	Right-handed alpha
Helix 63	AG9	F	139	143	Right-handed 310
Helix 64	AH1	F	177	182	Right-handed alpha
Helix 65	AH2	F	186	192	Right-handed alpha
Helix 66	AH3	F	194	200	Right-handed alpha
Helix 67	AH4	F	262	269	Right-handed alpha
Helix 68	AH5	F	305	311	Right-handed alpha
Helix 69	AH6	F	312	320	Right-handed alpha
Helix 70	AH7	F	329	343	Right-handed alpha
Helix 71	AH8	G	9	13	Right-handed 310
Helix 72	AH9	G	20	27	Right-handed alpha
Helix 73	AI1	G	39	47	Right-handed alpha
Helix 74	AI2	G	73	82	Right-handed alpha
Helix 75	AI3	G	115	119	Right-handed 310
Helix 76	AI4	G	151	156	Right-handed alpha
Helix 77	AI5	G	164	170	Right-handed alpha
Helix 78	AI6	G	176	185	Right-handed alpha
Helix 79	AI7	G	221	232	Right-handed alpha
Helix 80	AI8	G	246	251	Right-handed alpha
Helix 81	AI9	G	252	257	Right-handed alpha
Helix 82	AJ1	G	414	431	Right-handed alpha
Helix 83	AJ2	G	496	502	Right-handed alpha
Helix 84	AJ3	G	527	534	Right-handed alpha
Helix 85	AJ4	G	552	561	Right-handed alpha
Helix 86	AJ5	H	16	31	Right-handed alpha
Helix 87	AJ6	H	65	70	Right-handed alpha
Helix 88	AJ7	H	76	81	Right-handed alpha
Helix 89	AJ8	H	111	125	Right-handed alpha
Helix 90	AJ9	H	134	138	Right-handed 310
Helix 91	AK1	I	18	23	Right-handed alpha
Helix 92	AK2	I	34	48	Right-handed alpha
Helix 93	AK3	I	71	82	Right-handed alpha
Helix 94	AK4	I	144	148	Right-handed 310
Helix 95	AK5	I	199	204	Right-handed alpha
Helix 96	AK6	I	219	230	Right-handed alpha
Helix 97	AK7	I	249	268	Right-handed alpha
Helix 98	AK8	I	283	288	Right-handed alpha
Helix 99	AK9	I	300	313	Right-handed alpha
Helix 100	AL1	I	327	336	Right-handed alpha
Helix 101	AL2	I	339	348	Right-handed alpha
Helix 102	AL3	I	372	383	Right-handed alpha
Helix 103	AL4	I	389	393	Right-handed 310
Helix 104	AL5	J	17	27	Right-handed alpha
Helix 105	AL6	J	35	46	Right-handed alpha
Helix 106	AL7	J	70	84	Right-handed alpha
Helix 107	AL8	J	199	209	Right-handed alpha
Helix 108	AL9	J	219	234	Right-handed alpha
Helix 109	AM1	J	240	245	Right-handed alpha
Helix 110	AM2	J	249	263	Right-handed alpha
Helix 111	AM3	J	300	313	Right-handed alpha
Helix 112	AM4	J	331	336	Right-handed alpha
Helix 113	AM5	J	341	347	Right-handed alpha
Helix 114	AM6	J	372	383	Right-handed alpha

There are 42 sheets in PDB entry 6PIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	84	94	anti-parallel
Strand 4	A	204	214	anti-parallel
Strand 5	A	151	159	anti-parallel
Strand 6	A	166	168	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	69	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	254	257	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	295	296	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	19	23	anti-parallel
Strand 4	B	29	31	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	204	214	anti-parallel
Strand 4	B	151	159	anti-parallel
Strand 5	B	166	168	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	41	first strand
Strand 2	B	69	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	254	257	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	19	23	anti-parallel
Strand 4	C	29	31	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	204	214	anti-parallel
Strand 4	C	151	159	anti-parallel
Strand 5	C	166	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	41	first strand
Strand 2	C	69	75	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	254	257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	282	283	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	19	23	anti-parallel
Strand 4	D	29	31	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	84	94	anti-parallel
Strand 3	D	204	214	anti-parallel
Strand 4	D	151	159	anti-parallel
Strand 5	D	166	168	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	42	first strand
Strand 2	D	68	75	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	254	257	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	282	283	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	19	23	anti-parallel
Strand 4	E	29	31	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	84	94	anti-parallel
Strand 3	E	204	214	anti-parallel
Strand 4	E	151	159	anti-parallel
Strand 5	E	166	168	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	42	first strand
Strand 2	E	68	75	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	251	first strand
Strand 2	E	254	257	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	272	first strand
Strand 2	E	282	283	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	19	23	anti-parallel
Strand 4	F	29	31	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	84	94	anti-parallel
Strand 3	F	204	214	anti-parallel
Strand 4	F	151	159	anti-parallel
Strand 5	F	166	168	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	H	143	146	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	251	first strand
Strand 2	F	254	257	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	272	first strand
Strand 2	F	282	283	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	207	first strand
Strand 2	G	213	218	anti-parallel
Strand 3	G	591	604	parallel
Strand 4	G	542	545	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	207	first strand
Strand 2	G	213	218	anti-parallel
Strand 3	G	591	604	parallel
Strand 4	G	567	575	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	441	447	first strand
Strand 2	G	481	487	anti-parallel
Strand 3	G	390	399	anti-parallel
Strand 4	G	511	513	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	441	447	first strand
Strand 2	G	481	487	anti-parallel
Strand 3	G	390	399	anti-parallel
Strand 4	G	524	525	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	401	402	first strand
Strand 2	G	477	478	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	460	461	first strand
Strand 2	G	467	468	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	618	619	first strand
Strand 2	G	628	629	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	90	91	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	56	first strand
Strand 2	H	8	10	anti-parallel
Strand 3	H	84	85	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	167	170	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	99	first strand
Strand 2	I	108	109	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	325	326	first strand
Strand 2	I	370	371	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	99	first strand
Strand 2	J	111	112	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	325	326	first strand
Strand 2	J	370	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PIJ