Analysis of interatomic Contacts of Structural Units in PDB entry:
6PIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PIT entry

There are 8 chains in PDB entry 6PIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 307GLU 380
A
 ALA 382HIS 547
B
 LEU 308LYS 416
B
 VAL 418HIS 547
D
 LYS 3ARG 7
D
 LEU 9GLN 10
C
 ARG 7ARG 7
C
 LEU 9LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6PIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 323Right-handed alpha
Helix 2
AA2
A
341 363Right-handed alpha
Helix 3
AA3
A
371 395Right-handed alpha
Helix 4
AA4
A
413 416Right-handed 310
Helix 5
AA5
A
422 439Right-handed alpha
Helix 6
AA6
A
441 456Right-handed alpha
Helix 7
AA7
A
466 493Right-handed alpha
Helix 8
AA8
A
496 529Right-handed alpha
Helix 9
AA9
A
537 546Right-handed alpha
Helix 10
AB1
B
311 322Right-handed alpha
Helix 11
AB2
B
342 363Right-handed alpha
Helix 12
AB3
B
371 395Right-handed alpha
Helix 13
AB4
B
413 416Right-handed 310
Helix 14
AB5
B
421 438Right-handed alpha
Helix 15
AB6
B
441 456Right-handed alpha
Helix 16
AB7
B
474 494Right-handed alpha
Helix 17
AB8
B
496 531Right-handed alpha
Helix 18
AB9
B
537 546Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6PIT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il