Analysis of interatomic Contacts of Structural Units in PDB entry:
6PJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PJJ entry

There are 8 chains in PDB entry 6PJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 674	PRO 848
A	LEU 850	GLU 1005
B	TYR 674	PRO 848
B	LEU 850	GLU 1005
C	GLY 673	PRO 848
C	LEU 850	GLU 1005
D	VAL 677	PRO 848
D	LEU 850	GLU 1005

There are 63 helices in PDB entry 6PJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	722	743	Right-handed alpha
Helix 2	AA2	A	774	781	Right-handed alpha
Helix 3	AA3	A	788	809	Right-handed alpha
Helix 4	AA4	A	817	819	Right-handed 310
Helix 5	AA5	A	852	856	Right-handed 310
Helix 6	AA6	A	857	863	Right-handed alpha
Helix 7	AA7	A	868	885	Right-handed alpha
Helix 8	AA8	A	893	906	Right-handed alpha
Helix 9	AA9	A	909	915	Right-handed alpha
Helix 10	AB1	A	918	922	Right-handed 310
Helix 11	AB2	A	954	961	Right-handed alpha
Helix 12	AB3	A	966	984	Right-handed alpha
Helix 13	AB4	A	987	991	Right-handed 310
Helix 14	AB5	A	993	999	Right-handed alpha
Helix 15	AB6	A	1000	1005	Right-handed alpha
Helix 16	AB7	B	708	710	Right-handed 310
Helix 17	AB8	B	722	743	Right-handed alpha
Helix 18	AB9	B	774	781	Right-handed alpha
Helix 19	AC1	B	788	809	Right-handed alpha
Helix 20	AC2	B	817	819	Right-handed 310
Helix 21	AC3	B	852	856	Right-handed 310
Helix 22	AC4	B	857	863	Right-handed alpha
Helix 23	AC5	B	868	885	Right-handed alpha
Helix 24	AC6	B	893	906	Right-handed alpha
Helix 25	AC7	B	909	914	Right-handed alpha
Helix 26	AC8	B	918	923	Right-handed alpha
Helix 27	AC9	B	954	961	Right-handed alpha
Helix 28	AD1	B	966	984	Right-handed alpha
Helix 29	AD2	B	987	991	Right-handed 310
Helix 30	AD3	B	993	999	Right-handed alpha
Helix 31	AD4	B	1000	1005	Right-handed alpha
Helix 32	AD5	C	708	710	Right-handed 310
Helix 33	AD6	C	722	742	Right-handed alpha
Helix 34	AD7	C	774	781	Right-handed alpha
Helix 35	AD8	C	788	809	Right-handed alpha
Helix 36	AD9	C	817	819	Right-handed 310
Helix 37	AE1	C	852	856	Right-handed 310
Helix 38	AE2	C	857	863	Right-handed alpha
Helix 39	AE3	C	868	885	Right-handed alpha
Helix 40	AE4	C	893	906	Right-handed alpha
Helix 41	AE5	C	909	915	Right-handed alpha
Helix 42	AE6	C	918	922	Right-handed 310
Helix 43	AE7	C	954	961	Right-handed alpha
Helix 44	AE8	C	966	984	Right-handed alpha
Helix 45	AE9	C	987	991	Right-handed 310
Helix 46	AF1	C	993	999	Right-handed alpha
Helix 47	AF2	C	1000	1005	Right-handed alpha
Helix 48	AF3	D	708	710	Right-handed 310
Helix 49	AF4	D	722	742	Right-handed alpha
Helix 50	AF5	D	774	781	Right-handed alpha
Helix 51	AF6	D	788	809	Right-handed alpha
Helix 52	AF7	D	817	819	Right-handed 310
Helix 53	AF8	D	852	856	Right-handed 310
Helix 54	AF9	D	857	863	Right-handed alpha
Helix 55	AG1	D	868	885	Right-handed alpha
Helix 56	AG2	D	893	906	Right-handed alpha
Helix 57	AG3	D	909	915	Right-handed alpha
Helix 58	AG4	D	918	922	Right-handed 310
Helix 59	AG5	D	954	961	Right-handed alpha
Helix 60	AG6	D	966	984	Right-handed alpha
Helix 61	AG7	D	987	991	Right-handed 310
Helix 62	AG8	D	993	999	Right-handed alpha
Helix 63	AG9	D	1000	1005	Right-handed alpha

There are 16 sheets in PDB entry 6PJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	687	692	anti-parallel
Strand 3	A	701	706	anti-parallel
Strand 4	A	713	718	anti-parallel
Strand 5	A	762	767	anti-parallel
Strand 6	A	753	759	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	773	first strand
Strand 2	A	821	823	anti-parallel
Strand 3	A	830	832	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	812	first strand
Strand 2	A	839	840	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	929	933	first strand
Strand 2	A	942	946	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	687	694	anti-parallel
Strand 3	B	700	706	anti-parallel
Strand 4	B	713	718	anti-parallel
Strand 5	B	762	767	anti-parallel
Strand 6	B	753	759	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	773	first strand
Strand 2	B	821	823	anti-parallel
Strand 3	B	830	832	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	812	first strand
Strand 2	B	839	840	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	933	first strand
Strand 2	B	942	946	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	683	first strand
Strand 2	C	687	694	anti-parallel
Strand 3	C	700	706	anti-parallel
Strand 4	C	713	718	anti-parallel
Strand 5	C	762	767	anti-parallel
Strand 6	C	753	759	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	772	773	first strand
Strand 2	C	821	823	anti-parallel
Strand 3	C	830	832	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	811	812	first strand
Strand 2	C	839	840	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	929	933	first strand
Strand 2	C	942	946	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	687	692	anti-parallel
Strand 3	D	700	706	anti-parallel
Strand 4	D	713	718	anti-parallel
Strand 5	D	763	767	anti-parallel
Strand 6	D	753	758	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	772	773	first strand
Strand 2	D	821	823	anti-parallel
Strand 3	D	830	832	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	811	812	first strand
Strand 2	D	839	840	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	933	first strand
Strand 2	D	942	946	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PJJ