Analysis of interatomic Contacts of Structural Units in PDB entry:
6PJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PJW entry

There are 4 chains in PDB entry 6PJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LYS 192
B	LYS 2	LYS 192
C	LYS 2	LYS 192
D	LYS 2	MET 59

There are 96 helices in PDB entry 6PJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	30	Right-handed alpha
Helix 2	AA2	A	39	51	Right-handed alpha
Helix 3	AA3	A	55	62	Right-handed 310
Helix 4	AA4	A	63	85	Right-handed alpha
Helix 5	AA5	A	106	114	Right-handed alpha
Helix 6	AA6	A	124	133	Right-handed alpha
Helix 7	AA7	A	144	167	Right-handed alpha
Helix 8	AA8	A	179	191	Right-handed alpha
Helix 9	AA9	B	15	30	Right-handed alpha
Helix 10	AB1	B	39	50	Right-handed alpha
Helix 11	AB2	B	55	62	Right-handed 310
Helix 12	AB3	B	63	82	Right-handed alpha
Helix 13	AB4	B	106	114	Right-handed alpha
Helix 14	AB5	B	124	134	Right-handed alpha
Helix 15	AB6	B	144	167	Right-handed alpha
Helix 16	AB7	B	179	191	Right-handed alpha
Helix 17	AB8	C	15	30	Right-handed alpha
Helix 18	AB9	C	39	51	Right-handed alpha
Helix 19	AC1	C	55	59	Right-handed 310
Helix 20	AC2	C	63	83	Right-handed alpha
Helix 21	AC3	C	106	114	Right-handed alpha
Helix 22	AC4	C	124	134	Right-handed alpha
Helix 23	AC5	C	144	167	Right-handed alpha
Helix 24	AC6	C	179	191	Right-handed alpha
Helix 25	AC7	D	15	29	Right-handed alpha
Helix 26	AC8	D	39	50	Right-handed alpha
Helix 27	AC9	D	55	62	Right-handed 310
Helix 28	AD1	D	63	85	Right-handed alpha
Helix 29	AD2	D	106	114	Right-handed alpha
Helix 30	AD3	D	124	134	Right-handed alpha
Helix 31	AD4	D	144	167	Right-handed alpha
Helix 32	AD5	D	179	192	Right-handed alpha
Helix 33	AD6	E	15	29	Right-handed alpha
Helix 34	AD7	E	39	50	Right-handed alpha
Helix 35	AD8	E	55	62	Right-handed 310
Helix 36	AD9	E	63	85	Right-handed alpha
Helix 37	AE1	E	106	114	Right-handed alpha
Helix 38	AE2	E	124	134	Right-handed alpha
Helix 39	AE3	E	144	167	Right-handed alpha
Helix 40	AE4	E	179	191	Right-handed alpha
Helix 41	AE5	F	15	29	Right-handed alpha
Helix 42	AE6	F	39	50	Right-handed alpha
Helix 43	AE7	F	55	62	Right-handed 310
Helix 44	AE8	F	63	83	Right-handed alpha
Helix 45	AE9	F	106	114	Right-handed alpha
Helix 46	AF1	F	124	134	Right-handed alpha
Helix 47	AF2	F	144	167	Right-handed alpha
Helix 48	AF3	F	179	191	Right-handed alpha
Helix 49	AF4	G	15	29	Right-handed alpha
Helix 50	AF5	G	39	50	Right-handed alpha
Helix 51	AF6	G	55	62	Right-handed 310
Helix 52	AF7	G	63	85	Right-handed alpha
Helix 53	AF8	G	106	114	Right-handed alpha
Helix 54	AF9	G	124	134	Right-handed alpha
Helix 55	AG1	G	144	167	Right-handed alpha
Helix 56	AG2	G	179	191	Right-handed alpha
Helix 57	AG3	H	15	31	Right-handed alpha
Helix 58	AG4	H	39	51	Right-handed alpha
Helix 59	AG5	H	55	62	Right-handed 310
Helix 60	AG6	H	63	83	Right-handed alpha
Helix 61	AG7	H	106	114	Right-handed alpha
Helix 62	AG8	H	124	135	Right-handed alpha
Helix 63	AG9	H	144	167	Right-handed alpha
Helix 64	AH1	H	179	191	Right-handed alpha
Helix 65	AH2	I	15	29	Right-handed alpha
Helix 66	AH3	I	39	51	Right-handed alpha
Helix 67	AH4	I	58	62	Right-handed 310
Helix 68	AH5	I	63	83	Right-handed alpha
Helix 69	AH6	I	106	114	Right-handed alpha
Helix 70	AH7	I	124	134	Right-handed alpha
Helix 71	AH8	I	144	167	Right-handed alpha
Helix 72	AH9	I	179	191	Right-handed alpha
Helix 73	AI1	J	15	30	Right-handed alpha
Helix 74	AI2	J	39	50	Right-handed alpha
Helix 75	AI3	J	55	62	Right-handed 310
Helix 76	AI4	J	63	85	Right-handed alpha
Helix 77	AI5	J	106	114	Right-handed alpha
Helix 78	AI6	J	124	134	Right-handed alpha
Helix 79	AI7	J	144	167	Right-handed alpha
Helix 80	AI8	J	179	191	Right-handed alpha
Helix 81	AI9	K	15	30	Right-handed alpha
Helix 82	AJ1	K	39	50	Right-handed alpha
Helix 83	AJ2	K	55	62	Right-handed 310
Helix 84	AJ3	K	63	85	Right-handed alpha
Helix 85	AJ4	K	106	114	Right-handed alpha
Helix 86	AJ5	K	124	134	Right-handed alpha
Helix 87	AJ6	K	144	167	Right-handed alpha
Helix 88	AJ7	K	179	190	Right-handed alpha
Helix 89	AJ8	L	15	30	Right-handed alpha
Helix 90	AJ9	L	39	50	Right-handed alpha
Helix 91	AK1	L	55	62	Right-handed 310
Helix 92	AK2	L	63	85	Right-handed alpha
Helix 93	AK3	L	106	114	Right-handed alpha
Helix 94	AK4	L	124	133	Right-handed alpha
Helix 95	AK5	L	144	167	Right-handed alpha
Helix 96	AK6	L	179	191	Right-handed alpha

There are 24 sheets in PDB entry 6PJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	87	91	parallel
Strand 3	A	5	9	parallel
Strand 4	A	117	122	parallel
Strand 5	A	169	174	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	100	103	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	87	91	parallel
Strand 3	B	5	9	parallel
Strand 4	B	117	122	parallel
Strand 5	B	169	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	100	103	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	87	91	parallel
Strand 3	C	5	9	parallel
Strand 4	C	117	122	parallel
Strand 5	C	169	174	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	100	103	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	87	91	parallel
Strand 3	D	5	9	parallel
Strand 4	D	117	122	parallel
Strand 5	D	169	174	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	100	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	87	91	parallel
Strand 3	E	5	9	parallel
Strand 4	E	117	122	parallel
Strand 5	E	169	174	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	100	103	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	87	91	parallel
Strand 3	F	5	9	parallel
Strand 4	F	117	122	parallel
Strand 5	F	169	174	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	97	first strand
Strand 2	F	100	103	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	87	91	parallel
Strand 3	G	5	9	parallel
Strand 4	G	117	122	parallel
Strand 5	G	169	174	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	97	first strand
Strand 2	G	100	103	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	87	90	parallel
Strand 3	H	5	9	parallel
Strand 4	H	117	122	parallel
Strand 5	H	169	174	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	97	first strand
Strand 2	H	100	103	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	38	first strand
Strand 2	I	87	91	parallel
Strand 3	I	5	9	parallel
Strand 4	I	117	122	parallel
Strand 5	I	169	174	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	97	first strand
Strand 2	I	100	103	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	86	91	parallel
Strand 3	J	5	9	parallel
Strand 4	J	117	122	parallel
Strand 5	J	169	174	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	97	first strand
Strand 2	J	100	103	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	38	first strand
Strand 2	K	87	91	parallel
Strand 3	K	5	9	parallel
Strand 4	K	117	122	parallel
Strand 5	K	169	174	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	97	first strand
Strand 2	K	100	103	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	38	first strand
Strand 2	L	87	91	parallel
Strand 3	L	5	9	parallel
Strand 4	L	117	122	parallel
Strand 5	L	169	174	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	97	first strand
Strand 2	L	100	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PJW