Analysis of interatomic Contacts of Structural Units in PDB entry:
6PK7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PK7 entry

There are 4 chains in PDB entry 6PK7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 557
D	MET 1	GLN 557
E	MET 1	GLN 557
F	MET 1	GLN 557

There are100 helices in PDB entry 6PK7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	29	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	90	104	Right-handed alpha
Helix 5	AA5	A	117	129	Right-handed alpha
Helix 6	AA6	A	155	165	Right-handed alpha
Helix 7	AA7	A	165	170	Right-handed alpha
Helix 8	AA8	A	171	173	Right-handed 310
Helix 9	AA9	A	194	208	Right-handed alpha
Helix 10	AB1	A	225	234	Right-handed alpha
Helix 11	AB2	A	237	239	Right-handed 310
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	261	270	Right-handed alpha
Helix 14	AB5	A	281	294	Right-handed alpha
Helix 15	AB6	A	314	329	Right-handed alpha
Helix 16	AB7	A	340	342	Right-handed 310
Helix 17	AB8	A	343	350	Right-handed alpha
Helix 18	AB9	A	350	364	Right-handed alpha
Helix 19	AC1	A	377	390	Right-handed alpha
Helix 20	AC2	A	400	413	Right-handed alpha
Helix 21	AC3	A	464	469	Right-handed alpha
Helix 22	AC4	A	486	493	Right-handed 310
Helix 23	AC5	A	527	531	Right-handed 310
Helix 24	AC6	A	537	546	Right-handed alpha
Helix 25	AC7	A	550	555	Right-handed alpha
Helix 26	AC8	D	15	29	Right-handed alpha
Helix 27	AC9	D	68	72	Right-handed 310
Helix 28	AD1	D	73	78	Right-handed alpha
Helix 29	AD2	D	90	104	Right-handed alpha
Helix 30	AD3	D	117	129	Right-handed alpha
Helix 31	AD4	D	155	165	Right-handed alpha
Helix 32	AD5	D	165	170	Right-handed alpha
Helix 33	AD6	D	171	173	Right-handed 310
Helix 34	AD7	D	194	208	Right-handed alpha
Helix 35	AD8	D	225	234	Right-handed alpha
Helix 36	AD9	D	237	239	Right-handed 310
Helix 37	AE1	D	251	260	Right-handed alpha
Helix 38	AE2	D	261	270	Right-handed alpha
Helix 39	AE3	D	281	294	Right-handed alpha
Helix 40	AE4	D	314	329	Right-handed alpha
Helix 41	AE5	D	340	342	Right-handed 310
Helix 42	AE6	D	343	350	Right-handed alpha
Helix 43	AE7	D	350	364	Right-handed alpha
Helix 44	AE8	D	377	390	Right-handed alpha
Helix 45	AE9	D	400	413	Right-handed alpha
Helix 46	AF1	D	464	469	Right-handed alpha
Helix 47	AF2	D	486	493	Right-handed 310
Helix 48	AF3	D	527	531	Right-handed 310
Helix 49	AF4	D	537	546	Right-handed alpha
Helix 50	AF5	D	550	555	Right-handed alpha
Helix 51	AF6	E	15	29	Right-handed alpha
Helix 52	AF7	E	68	72	Right-handed 310
Helix 53	AF8	E	73	78	Right-handed alpha
Helix 54	AF9	E	90	104	Right-handed alpha
Helix 55	AG1	E	117	129	Right-handed alpha
Helix 56	AG2	E	155	165	Right-handed alpha
Helix 57	AG3	E	165	170	Right-handed alpha
Helix 58	AG4	E	171	173	Right-handed 310
Helix 59	AG5	E	194	208	Right-handed alpha
Helix 60	AG6	E	225	234	Right-handed alpha
Helix 61	AG7	E	237	239	Right-handed 310
Helix 62	AG8	E	251	260	Right-handed alpha
Helix 63	AG9	E	261	270	Right-handed alpha
Helix 64	AH1	E	281	294	Right-handed alpha
Helix 65	AH2	E	314	329	Right-handed alpha
Helix 66	AH3	E	340	342	Right-handed 310
Helix 67	AH4	E	343	350	Right-handed alpha
Helix 68	AH5	E	350	364	Right-handed alpha
Helix 69	AH6	E	377	390	Right-handed alpha
Helix 70	AH7	E	400	413	Right-handed alpha
Helix 71	AH8	E	464	469	Right-handed alpha
Helix 72	AH9	E	486	493	Right-handed 310
Helix 73	AI1	E	527	531	Right-handed 310
Helix 74	AI2	E	537	546	Right-handed alpha
Helix 75	AI3	E	550	555	Right-handed alpha
Helix 76	AI4	F	15	29	Right-handed alpha
Helix 77	AI5	F	68	72	Right-handed 310
Helix 78	AI6	F	73	78	Right-handed alpha
Helix 79	AI7	F	90	104	Right-handed alpha
Helix 80	AI8	F	117	129	Right-handed alpha
Helix 81	AI9	F	155	165	Right-handed alpha
Helix 82	AJ1	F	165	170	Right-handed alpha
Helix 83	AJ2	F	171	173	Right-handed 310
Helix 84	AJ3	F	194	208	Right-handed alpha
Helix 85	AJ4	F	225	234	Right-handed alpha
Helix 86	AJ5	F	237	239	Right-handed 310
Helix 87	AJ6	F	251	260	Right-handed alpha
Helix 88	AJ7	F	261	270	Right-handed alpha
Helix 89	AJ8	F	281	294	Right-handed alpha
Helix 90	AJ9	F	314	329	Right-handed alpha
Helix 91	AK1	F	340	342	Right-handed 310
Helix 92	AK2	F	343	350	Right-handed alpha
Helix 93	AK3	F	350	364	Right-handed alpha
Helix 94	AK4	F	377	390	Right-handed alpha
Helix 95	AK5	F	400	413	Right-handed alpha
Helix 96	AK6	F	464	469	Right-handed alpha
Helix 97	AK7	F	486	493	Right-handed 310
Helix 98	AK8	F	527	531	Right-handed 310
Helix 99	AK9	F	537	546	Right-handed alpha
Helix 100	AL1	F	550	555	Right-handed alpha

There are 20 sheets in PDB entry 6PK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	142	147	parallel
Strand 4	A	3	8	parallel
Strand 5	A	175	182	parallel
Strand 6	A	213	217	parallel
Strand 7	A	241	244	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	338	first strand
Strand 2	A	302	305	parallel
Strand 3	A	367	369	parallel
Strand 4	A	395	398	parallel
Strand 5	A	520	523	parallel
Strand 6	A	512	514	anti-parallel
Strand 7	A	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	430	435	parallel
Strand 3	A	482	484	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	480	first strand
Strand 2	A	449	457	anti-parallel
Strand 3	A	501	502	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	34	40	parallel
Strand 3	D	142	147	parallel
Strand 4	D	3	8	parallel
Strand 5	D	175	182	parallel
Strand 6	D	213	217	parallel
Strand 7	D	241	244	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	66	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	338	first strand
Strand 2	D	302	305	parallel
Strand 3	D	367	369	parallel
Strand 4	D	395	398	parallel
Strand 5	D	520	523	parallel
Strand 6	D	512	514	anti-parallel
Strand 7	D	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	421	first strand
Strand 2	D	430	435	parallel
Strand 3	D	482	484	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	480	first strand
Strand 2	D	449	457	anti-parallel
Strand 3	D	501	502	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	34	40	parallel
Strand 3	E	142	147	parallel
Strand 4	E	3	8	parallel
Strand 5	E	175	182	parallel
Strand 6	E	213	217	parallel
Strand 7	E	241	244	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	66	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	335	338	first strand
Strand 2	E	302	305	parallel
Strand 3	E	367	369	parallel
Strand 4	E	395	398	parallel
Strand 5	E	520	523	parallel
Strand 6	E	512	514	anti-parallel
Strand 7	E	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	421	first strand
Strand 2	E	430	435	parallel
Strand 3	E	482	484	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	480	first strand
Strand 2	E	449	457	anti-parallel
Strand 3	E	501	502	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	34	40	parallel
Strand 3	F	142	147	parallel
Strand 4	F	3	8	parallel
Strand 5	F	175	182	parallel
Strand 6	F	213	217	parallel
Strand 7	F	241	244	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	66	67	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	335	338	first strand
Strand 2	F	302	305	parallel
Strand 3	F	367	369	parallel
Strand 4	F	395	398	parallel
Strand 5	F	520	523	parallel
Strand 6	F	512	514	anti-parallel
Strand 7	F	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	421	first strand
Strand 2	F	430	435	parallel
Strand 3	F	482	484	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	480	first strand
Strand 2	F	449	457	anti-parallel
Strand 3	F	501	502	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PK7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PK7