Analysis of interatomic Contacts of Structural Units in PDB entry:
6PKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PKV entry

There are 4 chains in PDB entry 6PKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 40	ALA 1467
B	LEU 40	ALA 1467
C	LEU 40	ALA 1467
D	LEU 40	ALA 1467

There are192 helices in PDB entry 6PKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	49	Right-handed alpha
Helix 2	AA2	A	126	136	Right-handed alpha
Helix 3	AA3	A	159	177	Right-handed alpha
Helix 4	AA4	A	189	201	Right-handed alpha
Helix 5	AA5	A	274	288	Right-handed alpha
Helix 6	AA6	A	311	322	Right-handed alpha
Helix 7	AA7	A	332	342	Right-handed alpha
Helix 8	AA8	A	354	361	Right-handed alpha
Helix 9	AA9	A	374	387	Right-handed alpha
Helix 10	AB1	A	406	419	Right-handed alpha
Helix 11	AB2	A	426	439	Right-handed alpha
Helix 12	AB3	A	440	448	Right-handed alpha
Helix 13	AB4	A	460	470	Right-handed alpha
Helix 14	AB5	A	472	483	Right-handed alpha
Helix 15	AB6	A	485	490	Right-handed alpha
Helix 16	AB7	A	492	502	Right-handed alpha
Helix 17	AB8	A	506	517	Right-handed alpha
Helix 18	AB9	A	536	548	Right-handed alpha
Helix 19	AC1	A	593	606	Right-handed alpha
Helix 20	AC2	A	607	618	Right-handed alpha
Helix 21	AC3	A	620	639	Right-handed alpha
Helix 22	AC4	A	648	672	Right-handed alpha
Helix 23	AC5	A	672	681	Right-handed alpha
Helix 24	AC6	A	691	700	Right-handed alpha
Helix 25	AC7	A	701	706	Right-handed alpha
Helix 26	AC8	A	707	720	Right-handed alpha
Helix 27	AC9	A	729	737	Right-handed alpha
Helix 28	AD1	A	738	743	Right-handed 310
Helix 29	AD2	A	748	762	Right-handed alpha
Helix 30	AD3	A	799	807	Right-handed alpha
Helix 31	AD4	A	808	833	Right-handed alpha
Helix 32	AD5	A	840	865	Right-handed alpha
Helix 33	AD6	A	870	880	Right-handed alpha
Helix 34	AD7	A	882	902	Right-handed alpha
Helix 35	AD8	A	904	927	Right-handed alpha
Helix 36	AD9	A	928	932	Right-handed 310
Helix 37	AE1	A	935	946	Right-handed alpha
Helix 38	AE2	A	947	973	Right-handed alpha
Helix 39	AE3	A	978	987	Right-handed alpha
Helix 40	AE4	A	1036	1065	Right-handed alpha
Helix 41	AE5	A	1073	1092	Right-handed alpha
Helix 42	AE6	A	1096	1114	Right-handed alpha
Helix 43	AE7	A	1129	1154	Right-handed alpha
Helix 44	AE8	A	1158	1184	Right-handed alpha
Helix 45	AE9	A	1189	1208	Right-handed alpha
Helix 46	AF1	A	1270	1275	Right-handed alpha
Helix 47	AF2	A	1370	1381	Right-handed alpha
Helix 48	AF3	A	1456	1467	Right-handed alpha
Helix 49	AF4	B	41	49	Right-handed alpha
Helix 50	AF5	B	126	136	Right-handed alpha
Helix 51	AF6	B	159	177	Right-handed alpha
Helix 52	AF7	B	189	201	Right-handed alpha
Helix 53	AF8	B	274	288	Right-handed alpha
Helix 54	AF9	B	311	322	Right-handed alpha
Helix 55	AG1	B	332	342	Right-handed alpha
Helix 56	AG2	B	354	361	Right-handed alpha
Helix 57	AG3	B	374	387	Right-handed alpha
Helix 58	AG4	B	406	419	Right-handed alpha
Helix 59	AG5	B	426	439	Right-handed alpha
Helix 60	AG6	B	440	448	Right-handed alpha
Helix 61	AG7	B	460	470	Right-handed alpha
Helix 62	AG8	B	472	483	Right-handed alpha
Helix 63	AG9	B	485	490	Right-handed alpha
Helix 64	AH1	B	492	502	Right-handed alpha
Helix 65	AH2	B	506	517	Right-handed alpha
Helix 66	AH3	B	536	548	Right-handed alpha
Helix 67	AH4	B	593	606	Right-handed alpha
Helix 68	AH5	B	607	618	Right-handed alpha
Helix 69	AH6	B	620	639	Right-handed alpha
Helix 70	AH7	B	648	672	Right-handed alpha
Helix 71	AH8	B	672	681	Right-handed alpha
Helix 72	AH9	B	691	700	Right-handed alpha
Helix 73	AI1	B	701	706	Right-handed alpha
Helix 74	AI2	B	707	720	Right-handed alpha
Helix 75	AI3	B	729	737	Right-handed alpha
Helix 76	AI4	B	738	743	Right-handed 310
Helix 77	AI5	B	748	762	Right-handed alpha
Helix 78	AI6	B	799	807	Right-handed alpha
Helix 79	AI7	B	808	833	Right-handed alpha
Helix 80	AI8	B	840	865	Right-handed alpha
Helix 81	AI9	B	870	880	Right-handed alpha
Helix 82	AJ1	B	882	902	Right-handed alpha
Helix 83	AJ2	B	904	927	Right-handed alpha
Helix 84	AJ3	B	928	932	Right-handed 310
Helix 85	AJ4	B	935	946	Right-handed alpha
Helix 86	AJ5	B	947	973	Right-handed alpha
Helix 87	AJ6	B	978	987	Right-handed alpha
Helix 88	AJ7	B	1036	1065	Right-handed alpha
Helix 89	AJ8	B	1073	1092	Right-handed alpha
Helix 90	AJ9	B	1096	1114	Right-handed alpha
Helix 91	AK1	B	1129	1154	Right-handed alpha
Helix 92	AK2	B	1158	1184	Right-handed alpha
Helix 93	AK3	B	1189	1208	Right-handed alpha
Helix 94	AK4	B	1270	1275	Right-handed alpha
Helix 95	AK5	B	1370	1381	Right-handed alpha
Helix 96	AK6	B	1456	1467	Right-handed alpha
Helix 97	AK7	C	41	49	Right-handed alpha
Helix 98	AK8	C	126	136	Right-handed alpha
Helix 99	AK9	C	159	177	Right-handed alpha
Helix 100	AL1	C	189	201	Right-handed alpha
Helix 101	AL2	C	274	288	Right-handed alpha
Helix 102	AL3	C	311	322	Right-handed alpha
Helix 103	AL4	C	332	342	Right-handed alpha
Helix 104	AL5	C	354	361	Right-handed alpha
Helix 105	AL6	C	374	387	Right-handed alpha
Helix 106	AL7	C	406	419	Right-handed alpha
Helix 107	AL8	C	426	439	Right-handed alpha
Helix 108	AL9	C	440	448	Right-handed alpha
Helix 109	AM1	C	460	470	Right-handed alpha
Helix 110	AM2	C	472	483	Right-handed alpha
Helix 111	AM3	C	485	490	Right-handed alpha
Helix 112	AM4	C	492	502	Right-handed alpha
Helix 113	AM5	C	506	517	Right-handed alpha
Helix 114	AM6	C	536	548	Right-handed alpha
Helix 115	AM7	C	593	606	Right-handed alpha
Helix 116	AM8	C	607	618	Right-handed alpha
Helix 117	AM9	C	620	639	Right-handed alpha
Helix 118	AN1	C	648	672	Right-handed alpha
Helix 119	AN2	C	672	681	Right-handed alpha
Helix 120	AN3	C	691	700	Right-handed alpha
Helix 121	AN4	C	701	706	Right-handed alpha
Helix 122	AN5	C	707	720	Right-handed alpha
Helix 123	AN6	C	729	737	Right-handed alpha
Helix 124	AN7	C	738	743	Right-handed 310
Helix 125	AN8	C	748	762	Right-handed alpha
Helix 126	AN9	C	799	807	Right-handed alpha
Helix 127	AO1	C	808	833	Right-handed alpha
Helix 128	AO2	C	840	865	Right-handed alpha
Helix 129	AO3	C	870	880	Right-handed alpha
Helix 130	AO4	C	882	902	Right-handed alpha
Helix 131	AO5	C	904	927	Right-handed alpha
Helix 132	AO6	C	928	932	Right-handed 310
Helix 133	AO7	C	935	946	Right-handed alpha
Helix 134	AO8	C	947	973	Right-handed alpha
Helix 135	AO9	C	978	987	Right-handed alpha
Helix 136	AP1	C	1036	1065	Right-handed alpha
Helix 137	AP2	C	1073	1092	Right-handed alpha
Helix 138	AP3	C	1096	1114	Right-handed alpha
Helix 139	AP4	C	1129	1154	Right-handed alpha
Helix 140	AP5	C	1158	1184	Right-handed alpha
Helix 141	AP6	C	1189	1208	Right-handed alpha
Helix 142	AP7	C	1270	1275	Right-handed alpha
Helix 143	AP8	C	1370	1381	Right-handed alpha
Helix 144	AP9	C	1456	1467	Right-handed alpha
Helix 145	AQ1	D	41	49	Right-handed alpha
Helix 146	AQ2	D	126	136	Right-handed alpha
Helix 147	AQ3	D	159	177	Right-handed alpha
Helix 148	AQ4	D	189	201	Right-handed alpha
Helix 149	AQ5	D	274	288	Right-handed alpha
Helix 150	AQ6	D	311	322	Right-handed alpha
Helix 151	AQ7	D	332	342	Right-handed alpha
Helix 152	AQ8	D	354	361	Right-handed alpha
Helix 153	AQ9	D	374	387	Right-handed alpha
Helix 154	AR1	D	406	419	Right-handed alpha
Helix 155	AR2	D	426	439	Right-handed alpha
Helix 156	AR3	D	440	448	Right-handed alpha
Helix 157	AR4	D	460	470	Right-handed alpha
Helix 158	AR5	D	472	483	Right-handed alpha
Helix 159	AR6	D	485	490	Right-handed alpha
Helix 160	AR7	D	492	502	Right-handed alpha
Helix 161	AR8	D	506	517	Right-handed alpha
Helix 162	AR9	D	536	548	Right-handed alpha
Helix 163	AS1	D	593	606	Right-handed alpha
Helix 164	AS2	D	607	618	Right-handed alpha
Helix 165	AS3	D	620	639	Right-handed alpha
Helix 166	AS4	D	648	672	Right-handed alpha
Helix 167	AS5	D	672	681	Right-handed alpha
Helix 168	AS6	D	691	700	Right-handed alpha
Helix 169	AS7	D	701	706	Right-handed alpha
Helix 170	AS8	D	707	720	Right-handed alpha
Helix 171	AS9	D	729	737	Right-handed alpha
Helix 172	AT1	D	738	743	Right-handed 310
Helix 173	AT2	D	748	762	Right-handed alpha
Helix 174	AT3	D	799	807	Right-handed alpha
Helix 175	AT4	D	808	833	Right-handed alpha
Helix 176	AT5	D	840	865	Right-handed alpha
Helix 177	AT6	D	870	880	Right-handed alpha
Helix 178	AT7	D	882	902	Right-handed alpha
Helix 179	AT8	D	904	927	Right-handed alpha
Helix 180	AT9	D	928	932	Right-handed 310
Helix 181	AU1	D	935	946	Right-handed alpha
Helix 182	AU2	D	947	973	Right-handed alpha
Helix 183	AU3	D	978	987	Right-handed alpha
Helix 184	AU4	D	1036	1065	Right-handed alpha
Helix 185	AU5	D	1073	1092	Right-handed alpha
Helix 186	AU6	D	1096	1114	Right-handed alpha
Helix 187	AU7	D	1129	1154	Right-handed alpha
Helix 188	AU8	D	1158	1184	Right-handed alpha
Helix 189	AU9	D	1189	1208	Right-handed alpha
Helix 190	AV1	D	1270	1275	Right-handed alpha
Helix 191	AV2	D	1370	1381	Right-handed alpha
Helix 192	AV3	D	1456	1467	Right-handed alpha

There are 12 sheets in PDB entry 6PKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	116	121	anti-parallel
Strand 3	A	259	263	parallel
Strand 4	A	213	218	parallel
Strand 5	A	179	184	parallel
Strand 6	A	145	149	parallel
Strand 7	A	301	305	parallel
Strand 8	A	326	328	parallel
Strand 9	A	392	394	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1361	1362	first strand
Strand 2	A	1323	1335	anti-parallel
Strand 3	A	1409	1419	parallel
Strand 4	A	1393	1399	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1361	1362	first strand
Strand 2	A	1323	1335	anti-parallel
Strand 3	A	1343	1347	anti-parallel
Strand 4	A	1445	1448	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	259	263	parallel
Strand 4	B	213	218	parallel
Strand 5	B	179	184	parallel
Strand 6	B	145	149	parallel
Strand 7	B	301	305	parallel
Strand 8	B	326	328	parallel
Strand 9	B	392	394	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1362	first strand
Strand 2	B	1323	1335	anti-parallel
Strand 3	B	1409	1419	parallel
Strand 4	B	1393	1399	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1362	first strand
Strand 2	B	1323	1335	anti-parallel
Strand 3	B	1343	1347	anti-parallel
Strand 4	B	1445	1448	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	116	121	anti-parallel
Strand 3	C	259	263	parallel
Strand 4	C	213	218	parallel
Strand 5	C	179	184	parallel
Strand 6	C	145	149	parallel
Strand 7	C	301	305	parallel
Strand 8	C	326	328	parallel
Strand 9	C	392	394	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1361	1362	first strand
Strand 2	C	1323	1335	anti-parallel
Strand 3	C	1409	1419	parallel
Strand 4	C	1393	1399	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1361	1362	first strand
Strand 2	C	1323	1335	anti-parallel
Strand 3	C	1343	1347	anti-parallel
Strand 4	C	1445	1448	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	116	121	anti-parallel
Strand 3	D	259	263	parallel
Strand 4	D	213	218	parallel
Strand 5	D	179	184	parallel
Strand 6	D	145	149	parallel
Strand 7	D	301	305	parallel
Strand 8	D	326	328	parallel
Strand 9	D	392	394	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1361	1362	first strand
Strand 2	D	1323	1335	anti-parallel
Strand 3	D	1409	1419	parallel
Strand 4	D	1393	1399	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1361	1362	first strand
Strand 2	D	1323	1335	anti-parallel
Strand 3	D	1343	1347	anti-parallel
Strand 4	D	1445	1448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PKV