Analysis of interatomic Contacts of Structural Units in PDB entry:
6PL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PL5 entry

There are 3 chains in PDB entry 6PL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 8ASP 359
B
 GLY 1VAL 580
D
 UNK 1UNK 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6PL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 33Right-handed alpha
Helix 2
AA2
A
36 58Right-handed alpha
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
68 87Right-handed alpha
Helix 5
AA5
A
105 122Right-handed alpha
Helix 6
AA6
A
130 133Right-handed 310
Helix 7
AA7
A
134 149Right-handed alpha
Helix 8
AA8
A
152 171Right-handed alpha
Helix 9
AA9
A
173 196Right-handed alpha
Helix 10
AB1
A
197 209Right-handed alpha
Helix 11
AB2
A
212 227Right-handed alpha
Helix 12
AB3
A
256 291Right-handed alpha
Helix 13
AB4
A
293 319Right-handed alpha
Helix 14
AB5
A
337 355Right-handed alpha
Helix 15
AB6
B
2 28Right-handed alpha
Helix 16
AB7
B
30 35Right-handed 310
Helix 17
AB8
B
81 90Right-handed alpha
Helix 18
AB9
B
110 120Right-handed alpha
Helix 19
AC1
B
140 145Right-handed alpha
Helix 20
AC2
B
151 156Right-handed alpha
Helix 21
AC3
B
168 174Right-handed alpha
Helix 22
AC4
B
174 179Right-handed alpha
Helix 23
AC5
B
215 241Right-handed alpha
Helix 24
AC6
B
273 279Right-handed alpha
Helix 25
AC7
B
282 290Right-handed alpha
Helix 26
AC8
B
306 309Right-handed 310
Helix 27
AC9
B
310 321Right-handed alpha
Helix 28
AD1
B
355 362Right-handed alpha
Helix 29
AD2
B
364 373Right-handed alpha
Helix 30
AD3
B
375 391Right-handed alpha
Helix 31
AD4
B
409 416Right-handed alpha
Helix 32
AD5
B
424 432Right-handed alpha
Helix 33
AD6
B
439 453Right-handed alpha
Helix 34
AD7
B
482 495Right-handed alpha
Helix 35
AD8
B
498 503Right-handed alpha
Helix 36
AD9
B
559 573Right-handed alpha
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There are 7 sheets in PDB entry 6PL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
195 202anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
62 74anti-parallel
Strand 3
B
126 134anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
62 74anti-parallel
Strand 3
B
55 57anti-parallel
Strand 4
B
210 212parallel
Strand 5
B
462 465anti-parallel
Strand 6
B
468 469anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
164 165anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 268first strand
Strand 2
B
250 255anti-parallel
Strand 3
B
545 550anti-parallel
Strand 4
B
527 533anti-parallel
Strand 5
B
510 516anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
353 354anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
342 344anti-parallel
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