Analysis of interatomic Contacts of Structural Units in PDB entry:
6PLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PLQ entry

There are 5 chains in PDB entry 6PLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	ILE 428
B	PRO 23	ILE 428
C	PRO 23	ILE 428
D	PRO 23	ILE 428
E	PRO 23	ILE 428

There are 60 helices in PDB entry 6PLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	30	35	Right-handed alpha
Helix 3	AA3	A	36	40	Right-handed 310
Helix 4	AA4	A	87	90	Right-handed 310
Helix 5	AA5	A	102	106	Right-handed 310
Helix 6	AA6	A	160	163	Right-handed 310
Helix 7	AA7	A	238	243	Right-handed alpha
Helix 8	AA8	A	245	256	Right-handed alpha
Helix 9	AA9	A	257	260	Right-handed 310
Helix 10	AB1	A	264	285	Right-handed alpha
Helix 11	AB2	A	299	325	Right-handed alpha
Helix 12	AB3	A	391	425	Right-handed alpha
Helix 13	AB4	B	25	30	Right-handed alpha
Helix 14	AB5	B	30	35	Right-handed alpha
Helix 15	AB6	B	36	40	Right-handed 310
Helix 16	AB7	B	87	90	Right-handed 310
Helix 17	AB8	B	102	106	Right-handed 310
Helix 18	AB9	B	160	163	Right-handed 310
Helix 19	AC1	B	238	243	Right-handed alpha
Helix 20	AC2	B	245	256	Right-handed alpha
Helix 21	AC3	B	257	260	Right-handed 310
Helix 22	AC4	B	264	285	Right-handed alpha
Helix 23	AC5	B	299	325	Right-handed alpha
Helix 24	AC6	B	391	425	Right-handed alpha
Helix 25	AC7	C	25	30	Right-handed alpha
Helix 26	AC8	C	30	35	Right-handed alpha
Helix 27	AC9	C	36	40	Right-handed 310
Helix 28	AD1	C	87	90	Right-handed 310
Helix 29	AD2	C	102	106	Right-handed 310
Helix 30	AD3	C	160	163	Right-handed 310
Helix 31	AD4	C	238	243	Right-handed alpha
Helix 32	AD5	C	245	256	Right-handed alpha
Helix 33	AD6	C	257	260	Right-handed 310
Helix 34	AD7	C	264	285	Right-handed alpha
Helix 35	AD8	C	299	325	Right-handed alpha
Helix 36	AD9	C	391	425	Right-handed alpha
Helix 37	AE1	D	25	30	Right-handed alpha
Helix 38	AE2	D	30	35	Right-handed alpha
Helix 39	AE3	D	36	40	Right-handed 310
Helix 40	AE4	D	87	90	Right-handed 310
Helix 41	AE5	D	102	106	Right-handed 310
Helix 42	AE6	D	160	163	Right-handed 310
Helix 43	AE7	D	238	243	Right-handed alpha
Helix 44	AE8	D	245	256	Right-handed alpha
Helix 45	AE9	D	257	260	Right-handed 310
Helix 46	AF1	D	264	285	Right-handed alpha
Helix 47	AF2	D	299	325	Right-handed alpha
Helix 48	AF3	D	391	425	Right-handed alpha
Helix 49	AF4	E	25	30	Right-handed alpha
Helix 50	AF5	E	30	35	Right-handed alpha
Helix 51	AF6	E	36	40	Right-handed 310
Helix 52	AF7	E	87	90	Right-handed 310
Helix 53	AF8	E	102	106	Right-handed 310
Helix 54	AF9	E	160	163	Right-handed 310
Helix 55	AG1	E	238	243	Right-handed alpha
Helix 56	AG2	E	245	256	Right-handed alpha
Helix 57	AG3	E	257	260	Right-handed 310
Helix 58	AG4	E	264	285	Right-handed alpha
Helix 59	AG5	E	299	325	Right-handed alpha
Helix 60	AG6	E	391	425	Right-handed alpha

There are 25 sheets in PDB entry 6PLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	141	153	anti-parallel
Strand 4	A	73	85	anti-parallel
Strand 5	A	53	68	anti-parallel
Strand 6	A	182	186	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	141	153	anti-parallel
Strand 3	A	73	85	anti-parallel
Strand 4	A	53	68	anti-parallel
Strand 5	A	192	194	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	170	174	anti-parallel
Strand 3	A	225	228	anti-parallel
Strand 4	A	211	213	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	231	234	anti-parallel
Strand 3	A	203	205	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	222	223	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	141	153	anti-parallel
Strand 4	B	73	85	anti-parallel
Strand 5	B	53	68	anti-parallel
Strand 6	B	182	186	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	141	153	anti-parallel
Strand 3	B	73	85	anti-parallel
Strand 4	B	53	68	anti-parallel
Strand 5	B	192	194	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	170	174	anti-parallel
Strand 3	B	225	228	anti-parallel
Strand 4	B	211	213	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	167	first strand
Strand 2	B	231	234	anti-parallel
Strand 3	B	203	205	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	222	223	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	141	153	anti-parallel
Strand 4	C	73	85	anti-parallel
Strand 5	C	53	68	anti-parallel
Strand 6	C	182	186	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	141	153	anti-parallel
Strand 3	C	73	85	anti-parallel
Strand 4	C	53	68	anti-parallel
Strand 5	C	192	194	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	170	174	anti-parallel
Strand 3	C	225	228	anti-parallel
Strand 4	C	211	213	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	231	234	anti-parallel
Strand 3	C	203	205	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	222	223	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	141	153	anti-parallel
Strand 4	D	73	85	anti-parallel
Strand 5	D	53	68	anti-parallel
Strand 6	D	182	186	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	141	153	anti-parallel
Strand 3	D	73	85	anti-parallel
Strand 4	D	53	68	anti-parallel
Strand 5	D	192	194	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	170	174	anti-parallel
Strand 3	D	225	228	anti-parallel
Strand 4	D	211	213	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	231	234	anti-parallel
Strand 3	D	203	205	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	222	223	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	132	136	anti-parallel
Strand 3	E	141	153	anti-parallel
Strand 4	E	73	85	anti-parallel
Strand 5	E	53	68	anti-parallel
Strand 6	E	182	186	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	141	153	anti-parallel
Strand 3	E	73	85	anti-parallel
Strand 4	E	53	68	anti-parallel
Strand 5	E	192	194	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	170	174	anti-parallel
Strand 3	E	225	228	anti-parallel
Strand 4	E	211	213	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	231	234	anti-parallel
Strand 3	E	203	205	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PLQ