Analysis of interatomic Contacts of Structural Units in PDB entry:
6PLW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PLW entry

There are 5 chains in PDB entry 6PLW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	ILE 428
B	PRO 23	ILE 428
C	PRO 23	ILE 428
D	PRO 23	ILE 428
E	PRO 23	ILE 428

There are 55 helices in PDB entry 6PLW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	34	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	87	90	Right-handed 310
Helix 4	AA4	A	105	109	Right-handed 310
Helix 5	AA5	A	160	163	Right-handed 310
Helix 6	AA6	A	236	243	Right-handed alpha
Helix 7	AA7	A	243	257	Right-handed alpha
Helix 8	AA8	A	266	285	Right-handed alpha
Helix 9	AA9	A	297	325	Right-handed alpha
Helix 10	AB1	A	389	400	Right-handed alpha
Helix 11	AB2	A	402	425	Right-handed alpha
Helix 12	AB3	B	25	34	Right-handed alpha
Helix 13	AB4	B	36	40	Right-handed 310
Helix 14	AB5	B	87	90	Right-handed 310
Helix 15	AB6	B	105	109	Right-handed 310
Helix 16	AB7	B	160	163	Right-handed 310
Helix 17	AB8	B	236	243	Right-handed alpha
Helix 18	AB9	B	243	257	Right-handed alpha
Helix 19	AC1	B	266	285	Right-handed alpha
Helix 20	AC2	B	297	325	Right-handed alpha
Helix 21	AC3	B	389	400	Right-handed alpha
Helix 22	AC4	B	402	425	Right-handed alpha
Helix 23	AC5	C	25	34	Right-handed alpha
Helix 24	AC6	C	36	40	Right-handed 310
Helix 25	AC7	C	87	90	Right-handed 310
Helix 26	AC8	C	105	109	Right-handed 310
Helix 27	AC9	C	160	163	Right-handed 310
Helix 28	AD1	C	236	243	Right-handed alpha
Helix 29	AD2	C	243	257	Right-handed alpha
Helix 30	AD3	C	266	285	Right-handed alpha
Helix 31	AD4	C	297	325	Right-handed alpha
Helix 32	AD5	C	389	400	Right-handed alpha
Helix 33	AD6	C	402	425	Right-handed alpha
Helix 34	AD7	D	25	34	Right-handed alpha
Helix 35	AD8	D	36	40	Right-handed 310
Helix 36	AD9	D	87	90	Right-handed 310
Helix 37	AE1	D	105	109	Right-handed 310
Helix 38	AE2	D	160	163	Right-handed 310
Helix 39	AE3	D	236	243	Right-handed alpha
Helix 40	AE4	D	243	257	Right-handed alpha
Helix 41	AE5	D	266	285	Right-handed alpha
Helix 42	AE6	D	297	325	Right-handed alpha
Helix 43	AE7	D	389	400	Right-handed alpha
Helix 44	AE8	D	402	425	Right-handed alpha
Helix 45	AE9	E	25	34	Right-handed alpha
Helix 46	AF1	E	36	40	Right-handed 310
Helix 47	AF2	E	87	90	Right-handed 310
Helix 48	AF3	E	105	109	Right-handed 310
Helix 49	AF4	E	160	163	Right-handed 310
Helix 50	AF5	E	236	243	Right-handed alpha
Helix 51	AF6	E	243	257	Right-handed alpha
Helix 52	AF7	E	266	285	Right-handed alpha
Helix 53	AF8	E	297	325	Right-handed alpha
Helix 54	AF9	E	389	400	Right-handed alpha
Helix 55	AG1	E	402	425	Right-handed alpha

There are 25 sheets in PDB entry 6PLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	141	153	anti-parallel
Strand 4	A	73	85	anti-parallel
Strand 5	A	53	68	anti-parallel
Strand 6	A	182	186	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	141	153	anti-parallel
Strand 3	A	73	85	anti-parallel
Strand 4	A	53	68	anti-parallel
Strand 5	A	192	194	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	203	205	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	222	223	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	141	153	anti-parallel
Strand 4	B	73	85	anti-parallel
Strand 5	B	53	68	anti-parallel
Strand 6	B	182	186	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	141	153	anti-parallel
Strand 3	B	73	85	anti-parallel
Strand 4	B	53	68	anti-parallel
Strand 5	B	192	194	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	203	205	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	210	213	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	222	223	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	141	153	anti-parallel
Strand 4	C	73	85	anti-parallel
Strand 5	C	53	68	anti-parallel
Strand 6	C	182	186	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	141	153	anti-parallel
Strand 3	C	73	85	anti-parallel
Strand 4	C	53	68	anti-parallel
Strand 5	C	192	194	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	203	205	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	222	223	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	141	153	anti-parallel
Strand 4	D	73	85	anti-parallel
Strand 5	D	53	68	anti-parallel
Strand 6	D	182	186	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	141	153	anti-parallel
Strand 3	D	73	85	anti-parallel
Strand 4	D	53	68	anti-parallel
Strand 5	D	192	194	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	203	205	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	210	213	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	222	223	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	132	137	anti-parallel
Strand 3	E	141	153	anti-parallel
Strand 4	E	73	85	anti-parallel
Strand 5	E	53	68	anti-parallel
Strand 6	E	182	186	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	141	153	anti-parallel
Strand 3	E	73	85	anti-parallel
Strand 4	E	53	68	anti-parallel
Strand 5	E	192	194	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	203	205	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PLW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PLW