Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PM3 entry

There are 5 chains in PDB entry 6PM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	ILE 428
B	PRO 23	ILE 428
C	PRO 23	ILE 428
D	PRO 23	ILE 428
E	PRO 23	ILE 428

There are 50 helices in PDB entry 6PM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	34	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	87	90	Right-handed 310
Helix 4	AA4	A	102	109	Right-handed 310
Helix 5	AA5	A	236	243	Right-handed alpha
Helix 6	AA6	A	243	254	Right-handed alpha
Helix 7	AA7	A	255	260	Right-handed 310
Helix 8	AA8	A	264	285	Right-handed alpha
Helix 9	AA9	A	298	324	Right-handed alpha
Helix 10	AB1	A	391	425	Right-handed alpha
Helix 11	AB2	B	25	34	Right-handed alpha
Helix 12	AB3	B	36	40	Right-handed 310
Helix 13	AB4	B	87	90	Right-handed 310
Helix 14	AB5	B	102	109	Right-handed 310
Helix 15	AB6	B	236	243	Right-handed alpha
Helix 16	AB7	B	243	254	Right-handed alpha
Helix 17	AB8	B	255	260	Right-handed 310
Helix 18	AB9	B	264	285	Right-handed alpha
Helix 19	AC1	B	298	324	Right-handed alpha
Helix 20	AC2	B	391	425	Right-handed alpha
Helix 21	AC3	C	25	34	Right-handed alpha
Helix 22	AC4	C	36	40	Right-handed 310
Helix 23	AC5	C	87	90	Right-handed 310
Helix 24	AC6	C	102	109	Right-handed 310
Helix 25	AC7	C	236	243	Right-handed alpha
Helix 26	AC8	C	243	254	Right-handed alpha
Helix 27	AC9	C	255	260	Right-handed 310
Helix 28	AD1	C	264	285	Right-handed alpha
Helix 29	AD2	C	298	324	Right-handed alpha
Helix 30	AD3	C	391	425	Right-handed alpha
Helix 31	AD4	D	25	34	Right-handed alpha
Helix 32	AD5	D	36	40	Right-handed 310
Helix 33	AD6	D	87	90	Right-handed 310
Helix 34	AD7	D	102	109	Right-handed 310
Helix 35	AD8	D	236	243	Right-handed alpha
Helix 36	AD9	D	243	254	Right-handed alpha
Helix 37	AE1	D	255	260	Right-handed 310
Helix 38	AE2	D	264	285	Right-handed alpha
Helix 39	AE3	D	298	324	Right-handed alpha
Helix 40	AE4	D	391	425	Right-handed alpha
Helix 41	AE5	E	25	34	Right-handed alpha
Helix 42	AE6	E	36	40	Right-handed 310
Helix 43	AE7	E	87	90	Right-handed 310
Helix 44	AE8	E	102	109	Right-handed 310
Helix 45	AE9	E	236	243	Right-handed alpha
Helix 46	AF1	E	243	254	Right-handed alpha
Helix 47	AF2	E	255	260	Right-handed 310
Helix 48	AF3	E	264	285	Right-handed alpha
Helix 49	AF4	E	298	324	Right-handed alpha
Helix 50	AF5	E	391	425	Right-handed alpha

There are 20 sheets in PDB entry 6PM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	73	85	anti-parallel
Strand 5	A	53	68	anti-parallel
Strand 6	A	182	186	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	73	85	anti-parallel
Strand 4	A	53	68	anti-parallel
Strand 5	A	192	194	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	203	213	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	222	223	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	73	85	anti-parallel
Strand 5	B	53	68	anti-parallel
Strand 6	B	182	186	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	73	85	anti-parallel
Strand 4	B	53	68	anti-parallel
Strand 5	B	192	194	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	203	213	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	222	223	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	73	85	anti-parallel
Strand 5	C	53	68	anti-parallel
Strand 6	C	182	186	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	73	85	anti-parallel
Strand 4	C	53	68	anti-parallel
Strand 5	C	192	194	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	203	213	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	222	223	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	141	150	anti-parallel
Strand 4	D	73	85	anti-parallel
Strand 5	D	53	68	anti-parallel
Strand 6	D	182	186	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	73	85	anti-parallel
Strand 4	D	53	68	anti-parallel
Strand 5	D	192	194	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	203	213	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	222	223	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	132	137	anti-parallel
Strand 3	E	141	150	anti-parallel
Strand 4	E	73	85	anti-parallel
Strand 5	E	53	68	anti-parallel
Strand 6	E	182	186	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	73	85	anti-parallel
Strand 4	E	53	68	anti-parallel
Strand 5	E	192	194	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	203	213	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM3