Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PM7 entry

There are 2 chains in PDB entry 6PM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASN 500
B
 ASN 3ASP 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6PM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 8Right-handed 310
Helix 2
AA2
A
9 18Right-handed alpha
Helix 3
AA3
A
53 64Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
156 158Right-handed 310
Helix 6
AA6
A
159 168Right-handed alpha
Helix 7
AA7
A
177 188Right-handed alpha
Helix 8
AA8
A
191 200Right-handed alpha
Helix 9
AA9
A
201 204Right-handed 310
Helix 10
AB1
A
245 256Right-handed alpha
Helix 11
AB2
A
258 270Right-handed alpha
Helix 12
AB3
A
284 291Right-handed alpha
Helix 13
AB4
A
323 328Right-handed alpha
Helix 14
AB5
A
347 365Right-handed alpha
Helix 15
AB6
A
368 376Right-handed 310
Helix 16
AB7
A
414 418Right-handed 310
Helix 17
AB8
A
439 448Right-handed alpha
Helix 18
AB9
A
451 467Right-handed alpha
Helix 19
AC1
A
470 485Right-handed alpha
Helix 20
AC2
A
485 500Right-handed alpha
Helix 21
AC3
B
9 18Right-handed alpha
Helix 22
AC4
B
53 64Right-handed alpha
Helix 23
AC5
B
96 100Right-handed 310
Helix 24
AC6
B
156 158Right-handed 310
Helix 25
AC7
B
159 168Right-handed alpha
Helix 26
AC8
B
177 188Right-handed alpha
Helix 27
AC9
B
191 199Right-handed alpha
Helix 28
AD1
B
200 204Right-handed 310
Helix 29
AD2
B
245 256Right-handed alpha
Helix 30
AD3
B
258 270Right-handed alpha
Helix 31
AD4
B
284 291Right-handed alpha
Helix 32
AD5
B
323 328Right-handed alpha
Helix 33
AD6
B
347 365Right-handed alpha
Helix 34
AD7
B
368 376Right-handed 310
Helix 35
AD8
B
414 418Right-handed 310
Helix 36
AD9
B
439 448Right-handed alpha
Helix 37
AE1
B
451 467Right-handed alpha
Helix 38
AE2
B
470 485Right-handed alpha
Helix 39
AE3
B
485 500Right-handed alpha
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There are 4 sheets in PDB entry 6PM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
B
428 430anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 344first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
228 237anti-parallel
Strand 4
A
275 283anti-parallel
Strand 5
A
310 319anti-parallel
Strand 6
A
77 86anti-parallel
Strand 7
A
105 113anti-parallel
Strand 8
A
130 137anti-parallel
Strand 9
A
140 147anti-parallel
Strand 10
A
213 214anti-parallel
Strand 11
A
228 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
B
41 43anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
228 237anti-parallel
Strand 4
B
275 283anti-parallel
Strand 5
B
310 319anti-parallel
Strand 6
B
77 86anti-parallel
Strand 7
B
105 113anti-parallel
Strand 8
B
130 137anti-parallel
Strand 9
B
140 147anti-parallel
Strand 10
B
213 214anti-parallel
Strand 11
B
228 237anti-parallel
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