Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PM9 entry

There are 8 chains in PDB entry 6PM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 59TYR 397
B
 ARG 59TYR 397
C
 ALA 49GLY 392
D
 VAL 50GLY 392
E
 THR 554LEU 693
F
 THR 554ILE 695
G
 THR 554ILE 695
H
 THR 554LEU 693
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6PM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 88Right-handed alpha
Helix 2
AA2
A
112 129Right-handed alpha
Helix 3
AA3
A
147 163Right-handed alpha
Helix 4
AA4
A
181 188Right-handed alpha
Helix 5
AA5
A
190 206Right-handed alpha
Helix 6
AA6
A
231 241Right-handed alpha
Helix 7
AA7
A
260 272Right-handed alpha
Helix 8
AA8
A
303 307Right-handed 310
Helix 9
AA9
A
317 320Right-handed 310
Helix 10
AB1
A
321 334Right-handed alpha
Helix 11
AB2
A
375 391Right-handed alpha
Helix 12
AB3
B
74 88Right-handed alpha
Helix 13
AB4
B
112 129Right-handed alpha
Helix 14
AB5
B
147 163Right-handed alpha
Helix 15
AB6
B
181 188Right-handed alpha
Helix 16
AB7
B
190 206Right-handed alpha
Helix 17
AB8
B
220 224Right-handed 310
Helix 18
AB9
B
231 241Right-handed alpha
Helix 19
AC1
B
260 271Right-handed alpha
Helix 20
AC2
B
300 307Right-handed 310
Helix 21
AC3
B
317 320Right-handed 310
Helix 22
AC4
B
321 335Right-handed alpha
Helix 23
AC5
B
375 391Right-handed alpha
Helix 24
AC6
C
74 88Right-handed alpha
Helix 25
AC7
C
112 129Right-handed alpha
Helix 26
AC8
C
147 163Right-handed alpha
Helix 27
AC9
C
181 186Right-handed alpha
Helix 28
AD1
C
190 206Right-handed alpha
Helix 29
AD2
C
220 224Right-handed 310
Helix 30
AD3
C
231 241Right-handed alpha
Helix 31
AD4
C
260 272Right-handed alpha
Helix 32
AD5
C
303 307Right-handed 310
Helix 33
AD6
C
318 320Right-handed 310
Helix 34
AD7
C
321 334Right-handed alpha
Helix 35
AD8
C
375 390Right-handed alpha
Helix 36
AD9
D
74 88Right-handed alpha
Helix 37
AE1
D
112 129Right-handed alpha
Helix 38
AE2
D
147 163Right-handed alpha
Helix 39
AE3
D
182 188Right-handed alpha
Helix 40
AE4
D
190 206Right-handed alpha
Helix 41
AE5
D
231 241Right-handed alpha
Helix 42
AE6
D
260 271Right-handed alpha
Helix 43
AE7
D
300 307Right-handed 310
Helix 44
AE8
D
317 320Right-handed 310
Helix 45
AE9
D
321 334Right-handed alpha
Helix 46
AF1
D
375 390Right-handed alpha
Helix 47
AF2
E
555 565Right-handed alpha
Helix 48
AF3
E
572 587Right-handed alpha
Helix 49
AF4
E
603 630Right-handed alpha
Helix 50
AF5
E
634 658Right-handed alpha
Helix 51
AF6
E
683 691Right-handed alpha
Helix 52
AF7
F
555 565Right-handed alpha
Helix 53
AF8
F
572 587Right-handed alpha
Helix 54
AF9
F
603 630Right-handed alpha
Helix 55
AG1
F
633 659Right-handed alpha
Helix 56
AG2
F
683 691Right-handed alpha
Helix 57
AG3
G
555 565Right-handed alpha
Helix 58
AG4
G
572 587Right-handed alpha
Helix 59
AG5
G
603 629Right-handed alpha
Helix 60
AG6
G
633 651Right-handed alpha
Helix 61
AG7
G
651 659Right-handed alpha
Helix 62
AG8
G
683 691Right-handed alpha
Helix 63
AG9
H
555 565Right-handed alpha
Helix 64
AH1
H
572 587Right-handed alpha
Helix 65
AH2
H
606 629Right-handed alpha
Helix 66
AH3
H
633 660Right-handed alpha
Helix 67
AH4
H
683 691Right-handed alpha
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There are 4 sheets in PDB entry 6PM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
92 95parallel
Strand 3
A
132 137parallel
Strand 4
A
168 172parallel
Strand 5
A
212 215parallel
Strand 6
A
246 249parallel
Strand 7
A
276 279parallel
Strand 8
A
309 312parallel
Strand 9
A
61 66parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 66first strand
Strand 2
B
92 95parallel
Strand 3
B
132 137parallel
Strand 4
B
168 172parallel
Strand 5
B
212 215parallel
Strand 6
B
246 249parallel
Strand 7
B
276 279parallel
Strand 8
B
309 312parallel
Strand 9
B
61 66parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 66first strand
Strand 2
C
92 95parallel
Strand 3
C
132 137parallel
Strand 4
C
168 172parallel
Strand 5
C
212 215parallel
Strand 6
C
246 249parallel
Strand 7
C
276 279parallel
Strand 8
C
309 312parallel
Strand 9
C
61 66parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 66first strand
Strand 2
D
92 95parallel
Strand 3
D
132 137parallel
Strand 4
D
168 172parallel
Strand 5
D
212 215parallel
Strand 6
D
246 249parallel
Strand 7
D
276 279parallel
Strand 8
D
309 312parallel
Strand 9
D
61 66parallel
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