Analysis of interatomic Contacts of Structural Units in PDB entry:
6PME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PME entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6PME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 500TYR 676
A
 THR 678PRO 788
B
 ASP 499TYR 676
B
 THR 678TYR 791
C
 ALA 500TYR 676
C
 THR 678VAL 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6PME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
506 508Right-handed 310
Helix 2
AA2
A
550 565Right-handed alpha
Helix 3
AA3
A
597 604Right-handed alpha
Helix 4
AA4
A
623 644Right-handed alpha
Helix 5
AA5
A
652 654Right-handed 310
Helix 6
AA6
A
660 662Right-handed 310
Helix 7
AA7
A
671 676Right-handed alpha
Helix 8
AA8
A
677 680Right-handed 310
Helix 9
AA9
A
690 694Right-handed 310
Helix 10
AB1
A
695 700Right-handed alpha
Helix 11
AB2
A
705 722Right-handed alpha
Helix 12
AB3
A
732 742Right-handed alpha
Helix 13
AB4
A
753 764Right-handed alpha
Helix 14
AB5
A
773 787Right-handed alpha
Helix 15
AB6
B
506 508Right-handed 310
Helix 16
AB7
B
551 565Right-handed alpha
Helix 17
AB8
B
597 604Right-handed alpha
Helix 18
AB9
B
623 644Right-handed alpha
Helix 19
AC1
B
652 654Right-handed 310
Helix 20
AC2
B
660 662Right-handed 310
Helix 21
AC3
B
671 676Right-handed alpha
Helix 22
AC4
B
677 680Right-handed 310
Helix 23
AC5
B
690 694Right-handed 310
Helix 24
AC6
B
695 702Right-handed alpha
Helix 25
AC7
B
705 722Right-handed alpha
Helix 26
AC8
B
732 743Right-handed alpha
Helix 27
AC9
B
753 764Right-handed alpha
Helix 28
AD1
B
767 771Right-handed 310
Helix 29
AD2
B
773 787Right-handed alpha
Helix 30
AD3
C
506 508Right-handed 310
Helix 31
AD4
C
551 565Right-handed alpha
Helix 32
AD5
C
596 604Right-handed alpha
Helix 33
AD6
C
623 644Right-handed alpha
Helix 34
AD7
C
652 654Right-handed 310
Helix 35
AD8
C
660 662Right-handed 310
Helix 36
AD9
C
671 676Right-handed alpha
Helix 37
AE1
C
677 680Right-handed 310
Helix 38
AE2
C
690 694Right-handed 310
Helix 39
AE3
C
695 700Right-handed alpha
Helix 40
AE4
C
705 722Right-handed alpha
Helix 41
AE5
C
732 743Right-handed alpha
Helix 42
AE6
C
753 765Right-handed alpha
Helix 43
AE7
C
767 771Right-handed 310
Helix 44
AE8
C
773 787Right-handed alpha
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There are 6 sheets in PDB entry 6PME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 518first strand
Strand 2
A
522 529anti-parallel
Strand 3
A
539 546anti-parallel
Strand 4
A
585 590anti-parallel
Strand 5
A
575 579anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
656 659anti-parallel
Strand 3
A
663 666anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 518first strand
Strand 2
B
522 530anti-parallel
Strand 3
B
538 546anti-parallel
Strand 4
B
585 590anti-parallel
Strand 5
B
575 579anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
595 596first strand
Strand 2
B
656 658anti-parallel
Strand 3
B
664 666anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
510 518first strand
Strand 2
C
522 529anti-parallel
Strand 3
C
539 546anti-parallel
Strand 4
C
585 590anti-parallel
Strand 5
C
575 579anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
656 659first strand
Strand 2
C
663 666anti-parallel
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